miRNA display CGI


Results 61 - 80 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 25884 0.7 0.508537
Target:  5'- gGCCGgcccucccgcgGCgCCCGCGCCCAGcG-CCGCg -3'
miRNA:   3'- -CGGCaca--------UG-GGGUGCGGGUC-CaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 26023 0.66 0.730898
Target:  5'- cCCGgagGgGCUCCACGUCCAGGggcccccggacgccCCGCa -3'
miRNA:   3'- cGGCa--CaUGGGGUGCGGGUCCa-------------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 26220 0.7 0.502909
Target:  5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3'
miRNA:   3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 26345 0.71 0.448266
Target:  5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3'
miRNA:   3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 27080 0.68 0.648977
Target:  5'- cGCCGaGUGCCUCACGgCCug--CCGCg -3'
miRNA:   3'- -CGGCaCAUGGGGUGCgGGuccaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 27377 0.73 0.372923
Target:  5'- gGCCGaUGUACC--GC-CCCAGGUCCAUg -3'
miRNA:   3'- -CGGC-ACAUGGggUGcGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 27578 0.74 0.327702
Target:  5'- cGCCGcg-GCCCCGCcCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGcGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 27605 0.66 0.755337
Target:  5'- gGCCccg-GgCCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGcacaUgGGGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 27681 0.66 0.736592
Target:  5'- cGCCGcGUGCCgCCgGgGCCCAG--CCACa -3'
miRNA:   3'- -CGGCaCAUGG-GG-UgCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 28330 0.68 0.629169
Target:  5'- cGCCGUGcUGCCCgC-CGCgCAGugcgacGUCCGCu -3'
miRNA:   3'- -CGGCAC-AUGGG-GuGCGgGUC------CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 28448 0.66 0.727087
Target:  5'- cGCCGacgcaGcGCCgCGCGaCCC-GGUCCGCg -3'
miRNA:   3'- -CGGCa----CaUGGgGUGC-GGGuCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 28473 0.67 0.678577
Target:  5'- cGCC----GCCgCCGCGCCUGGG-CCGCg -3'
miRNA:   3'- -CGGcacaUGG-GGUGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 28576 0.69 0.540899
Target:  5'- cGCCGUGcUG-CCCGCGCUCGacGG-CCGCg -3'
miRNA:   3'- -CGGCAC-AUgGGGUGCGGGU--CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 28753 0.67 0.678577
Target:  5'- cGCCGg--GCCCgACGCCCugccGcCCGCg -3'
miRNA:   3'- -CGGCacaUGGGgUGCGGGuc--CaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 29658 0.66 0.736592
Target:  5'- cGCCGUGcccgGCCCuCGCgGCCCcGGccccuccCCGCg -3'
miRNA:   3'- -CGGCACa---UGGG-GUG-CGGGuCCa------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 30250 0.71 0.45715
Target:  5'- cGCUGgggaaGUGCCaCCACGCCCccGGGcCCAg -3'
miRNA:   3'- -CGGCa----CAUGG-GGUGCGGG--UCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 30742 0.69 0.550552
Target:  5'- cGCagGUGUcgaGCUCCACgauGCCCGGGgCCGCg -3'
miRNA:   3'- -CGg-CACA---UGGGGUG---CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 30806 0.66 0.743195
Target:  5'- gGCCGaggGCCCCACgggggggcagggcgGCgCCAGGcgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUG--------------CG-GGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 31421 0.73 0.365099
Target:  5'- gGCCGgGgcggGCCCgCGCGCCCGGGcCCu- -3'
miRNA:   3'- -CGGCaCa---UGGG-GUGCGGGUCCaGGug -5'
21602 3' -60.2 NC_004812.1 + 31540 0.66 0.764562
Target:  5'- aGCCGggaucgaGUGCgCCCaccaacgccGCGCCCGGG-CgGCg -3'
miRNA:   3'- -CGGCa------CAUG-GGG---------UGCGGGUCCaGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.