miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 31989 0.66 0.717505
Target:  5'- gGCCGcgGUcuccuccuGCCCgGCgGCCCGGGUCg-- -3'
miRNA:   3'- -CGGCa-CA--------UGGGgUG-CGGGUCCAGgug -5'
21602 3' -60.2 NC_004812.1 + 32126 0.69 0.589631
Target:  5'- cGCCGcGgggGCUCCucccCGCCCGGGcggcgCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGu---GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 32134 0.66 0.746011
Target:  5'- gGCCGg--ACgCCACGgCCGGGcccccgCCGCg -3'
miRNA:   3'- -CGGCacaUGgGGUGCgGGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 32765 0.68 0.619264
Target:  5'- cGCCGgggGCCUCcauuggcccggGCGCCCGGGccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGG-----------UGCGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 33791 0.68 0.639076
Target:  5'- cGCCGUGgACUUCAucuggguggacCGCCCGGGggagcCCGCc -3'
miRNA:   3'- -CGGCACaUGGGGU-----------GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 34247 0.72 0.405341
Target:  5'- cGCCGc--GCCCCGCGCCCcGGcccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 34430 0.68 0.597515
Target:  5'- cGCCcaccagaCCCAgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGcacaug-GGGUgCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 34549 0.66 0.755337
Target:  5'- aGCCcag-GCCCgGCGCCCAaGUCC-Cg -3'
miRNA:   3'- -CGGcacaUGGGgUGCGGGUcCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 34616 0.66 0.727087
Target:  5'- cGCCcaaGUcccGCCCgGCGCUCAGGcCCAg -3'
miRNA:   3'- -CGGca-CA---UGGGgUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 34723 0.69 0.560258
Target:  5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3'
miRNA:   3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 34775 0.66 0.746011
Target:  5'- cGCCGcg-GCCCgcaaGCGCCCGGccUCCGCc -3'
miRNA:   3'- -CGGCacaUGGGg---UGCGGGUCc-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 35095 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 35628 0.67 0.688383
Target:  5'- gGgCGUGUGCCCgCuCGCCCGGGa---- -3'
miRNA:   3'- -CgGCACAUGGG-GuGCGGGUCCaggug -5'
21602 3' -60.2 NC_004812.1 + 36451 0.67 0.685446
Target:  5'- gGCCGcguUGUcgaggagcggggggGCCCCGCGcCCCAGGUa--- -3'
miRNA:   3'- -CGGC---ACA--------------UGGGGUGC-GGGUCCAggug -5'
21602 3' -60.2 NC_004812.1 + 36556 1.11 0.000927
Target:  5'- gGCCGUGUACCCCACGCCCAGGUCCACg -3'
miRNA:   3'- -CGGCACAUGGGGUGCGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 36644 0.66 0.727087
Target:  5'- cGCCGg--GCgCC--GCCCAGGcCCACa -3'
miRNA:   3'- -CGGCacaUGgGGugCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 38170 0.69 0.57001
Target:  5'- cGCCGgggcccgcgGgagggACCCgCGgGCCCggcAGGUCCACa -3'
miRNA:   3'- -CGGCa--------Ca----UGGG-GUgCGGG---UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 38945 0.7 0.512304
Target:  5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3'
miRNA:   3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 39113 0.69 0.547651
Target:  5'- gGCCGgggGCCCgcgucggaCGCGCCCggcggccgggccggGGGUCCGCc -3'
miRNA:   3'- -CGGCacaUGGG--------GUGCGGG--------------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 40204 0.69 0.560258
Target:  5'- gGCCGcGgggGCUCUGCGCggGGGUCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGUGCGggUCCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.