miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 150336 0.68 0.639076
Target:  5'- gGCCGU--GCCCCugGCCCuAGcUCCc- -3'
miRNA:   3'- -CGGCAcaUGGGGugCGGG-UCcAGGug -5'
21602 3' -60.2 NC_004812.1 + 150273 0.69 0.579803
Target:  5'- uGCCGcccccUGcUGCCCCuccUGCCCGGGgccccCCGCg -3'
miRNA:   3'- -CGGC-----AC-AUGGGGu--GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 150133 0.66 0.746011
Target:  5'- uGCC-UGUACCCgCAgGgcccgcucCCCGGGcCCGCg -3'
miRNA:   3'- -CGGcACAUGGG-GUgC--------GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 148573 0.67 0.687405
Target:  5'- cGCCGggggGUGCcggcggaggccggCCCGCGCCCcccgGGGUCgCGg -3'
miRNA:   3'- -CGGCa---CAUG-------------GGGUGCGGG----UCCAG-GUg -5'
21602 3' -60.2 NC_004812.1 + 144698 0.69 0.550552
Target:  5'- cGCCGccccaccccACCCCAuCGCCgAGGUCgCGCa -3'
miRNA:   3'- -CGGCaca------UGGGGU-GCGGgUCCAG-GUG- -5'
21602 3' -60.2 NC_004812.1 + 144010 0.69 0.540899
Target:  5'- aCCG-GUuucaCCUACGCCCGGGUgUACg -3'
miRNA:   3'- cGGCaCAug--GGGUGCGGGUCCAgGUG- -5'
21602 3' -60.2 NC_004812.1 + 143544 0.67 0.698145
Target:  5'- cGCCGUGaacgaggcgGCCCUggcGCGCCUGGG-CgACg -3'
miRNA:   3'- -CGGCACa--------UGGGG---UGCGGGUCCaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 143108 0.74 0.327702
Target:  5'- cGCCGUGgGCCCCGCGCCUGGcGcUgACg -3'
miRNA:   3'- -CGGCACaUGGGGUGCGGGUC-CaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 142144 0.67 0.668736
Target:  5'- gGCCccgc-CCCCGCGCCCuccGG-CCACa -3'
miRNA:   3'- -CGGcacauGGGGUGCGGGu--CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 141374 0.69 0.560258
Target:  5'- cGCCGgGUccGCCCUGCGCgaagcagucggCCAGG-CCGCg -3'
miRNA:   3'- -CGGCaCA--UGGGGUGCG-----------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 140385 0.75 0.255655
Target:  5'- gGCCGgccgGCUCCGCcuccggcgcgcgGCCCGGGUCCGCc -3'
miRNA:   3'- -CGGCaca-UGGGGUG------------CGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 139833 0.66 0.746011
Target:  5'- cGCCucgGccGCCCCACGCgucuUCGGGcCCGCg -3'
miRNA:   3'- -CGGca-Ca-UGGGGUGCG----GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 139387 0.66 0.746011
Target:  5'- uCCGUGU-CCCC-CGCuCCAGcGgcaccggCCGCg -3'
miRNA:   3'- cGGCACAuGGGGuGCG-GGUC-Ca------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 138842 0.67 0.695222
Target:  5'- -gCGUGUccccgcaggACCCCGCGguacCCCAGGacauggccuacgucUCCGCg -3'
miRNA:   3'- cgGCACA---------UGGGGUGC----GGGUCC--------------AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 138696 0.68 0.619264
Target:  5'- aCCGg--GCCUCGCGCCCGGacgaCCGCg -3'
miRNA:   3'- cGGCacaUGGGGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 138128 0.69 0.57001
Target:  5'- uGCCuGUGUcuggGCCCCGCggGCgCGGGgCCGCg -3'
miRNA:   3'- -CGG-CACA----UGGGGUG--CGgGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 137815 0.68 0.619264
Target:  5'- cGCCGcggagcaGgcCCCCugGCCCcgggAGGUCCugGCg -3'
miRNA:   3'- -CGGCa------CauGGGGugCGGG----UCCAGG--UG- -5'
21602 3' -60.2 NC_004812.1 + 137371 0.66 0.764562
Target:  5'- gGCCGgaGUucgaGCCCCggggggGCGCCguGGaCCACu -3'
miRNA:   3'- -CGGCa-CA----UGGGG------UGCGGguCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 137213 0.66 0.717505
Target:  5'- gGCCGUG-ACCgCGCGCguccuggugccCCGGGgCUACg -3'
miRNA:   3'- -CGGCACaUGGgGUGCG-----------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 135486 0.69 0.579803
Target:  5'- -aCGUGUcGCUgCAgGCCCAGG-CCGCc -3'
miRNA:   3'- cgGCACA-UGGgGUgCGGGUCCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.