miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 134591 0.72 0.413719
Target:  5'- cGUCGgggaGUACgCCAUGCCCGGGUUCuCg -3'
miRNA:   3'- -CGGCa---CAUGgGGUGCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 133906 0.72 0.380861
Target:  5'- gGCCGUGguaACCCCGgGCgggggggacgCgGGGUCCGCu -3'
miRNA:   3'- -CGGCACa--UGGGGUgCG----------GgUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 133847 0.66 0.735645
Target:  5'- ------cGCCCCcaccuggACGCaCCAGGUCCACc -3'
miRNA:   3'- cggcacaUGGGG-------UGCG-GGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 133355 0.7 0.52177
Target:  5'- gGCCGUGgACCUgGCGCaggUAGGUCCcGCu -3'
miRNA:   3'- -CGGCACaUGGGgUGCGg--GUCCAGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 133106 0.72 0.413719
Target:  5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3'
miRNA:   3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 132117 0.66 0.755337
Target:  5'- cGCgGgg-GCCCCcCGUCCAGGagcggCCGCc -3'
miRNA:   3'- -CGgCacaUGGGGuGCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 130779 0.67 0.688383
Target:  5'- cGCCGcg-GCCCCGCGCUC-GG-CCGa -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 130537 0.66 0.713653
Target:  5'- gGCCGacgACCCCGgGCCgGGGgcgcgcgagggcgCCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUgCGGgUCCa------------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 130375 0.7 0.530347
Target:  5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3'
miRNA:   3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 130206 0.66 0.717505
Target:  5'- cGCCccaGaGCCCCGggcggcuguCGCCCAGG-CCGCc -3'
miRNA:   3'- -CGGca-CaUGGGGU---------GCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 130074 0.66 0.727087
Target:  5'- cCCGUccGcACgCCACGCCCAGuUCCAg -3'
miRNA:   3'- cGGCA--CaUGgGGUGCGGGUCcAGGUg -5'
21602 3' -60.2 NC_004812.1 + 127282 0.69 0.550552
Target:  5'- aGCCGc--GCCCCGCGCCgaCGGGagCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGG--GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 126707 0.66 0.755337
Target:  5'- cGCCGcc-GCCaCCACGCCC-GGcCCGg -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGuCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 126328 0.66 0.764562
Target:  5'- gGCCGggaagcgGUGUCCgACGCCCggAGGgccCCGCg -3'
miRNA:   3'- -CGGCa------CAUGGGgUGCGGG--UCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 126282 0.67 0.668736
Target:  5'- cGCCGcGgGCCCCuucuGgGCCuCGGGUUCGCu -3'
miRNA:   3'- -CGGCaCaUGGGG----UgCGG-GUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125969 0.68 0.648977
Target:  5'- cCCGcGcgUCCCGCGCCCcGcGUCCGCg -3'
miRNA:   3'- cGGCaCauGGGGUGCGGGuC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125660 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125498 0.68 0.647988
Target:  5'- uGCCGcuuucUGgacGCCCCGcCGCCCaaugccacccgcaGGGUCUGCg -3'
miRNA:   3'- -CGGC-----ACa--UGGGGU-GCGGG-------------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125121 0.66 0.736592
Target:  5'- uCCGcGcUACCggagCCGCGCCCGcGGcUCCACg -3'
miRNA:   3'- cGGCaC-AUGG----GGUGCGGGU-CC-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 124484 0.66 0.746011
Target:  5'- gGCCGUGgcguccgGCCUC-CGCCaGGGcgCCAUg -3'
miRNA:   3'- -CGGCACa------UGGGGuGCGGgUCCa-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.