miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 124418 0.66 0.755337
Target:  5'- gGCCGUGcuggacgugGCCCgGagGCaCCcGGUCCGCg -3'
miRNA:   3'- -CGGCACa--------UGGGgUg-CG-GGuCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 123823 0.67 0.668736
Target:  5'- uGCCGcgGgcgggGCCCgGgCGCCCGGG-CCAa -3'
miRNA:   3'- -CGGCa-Ca----UGGGgU-GCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 122931 0.67 0.685446
Target:  5'- cGCCG-GUGCCCgaggcgCGCGUguuggcggugaaggCgGGGUCCACg -3'
miRNA:   3'- -CGGCaCAUGGG------GUGCG--------------GgUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 121259 0.66 0.727087
Target:  5'- cGCCGggGUACUCgggcggggacaCGCgGCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCa-CAUGGG-----------GUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 121031 0.67 0.687405
Target:  5'- cGCCGUcggGUGCCCCcgcCGCCCccucccucuauccGGGccCCGCc -3'
miRNA:   3'- -CGGCA---CAUGGGGu--GCGGG-------------UCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 120898 0.67 0.678577
Target:  5'- gGCCGcGUgccgACCCCGCGCCCGca-CCAg -3'
miRNA:   3'- -CGGCaCA----UGGGGUGCGGGUccaGGUg -5'
21602 3' -60.2 NC_004812.1 + 120633 0.67 0.682505
Target:  5'- gGCCGg--ACCCCGgccccccgagucuccCGCCCGGGcCCcCg -3'
miRNA:   3'- -CGGCacaUGGGGU---------------GCGGGUCCaGGuG- -5'
21602 3' -60.2 NC_004812.1 + 120192 0.75 0.267719
Target:  5'- cGCCGUGU-CCCUgcugcgcgGCGCCCGGcGUCCu- -3'
miRNA:   3'- -CGGCACAuGGGG--------UGCGGGUC-CAGGug -5'
21602 3' -60.2 NC_004812.1 + 119435 0.68 0.639076
Target:  5'- gGCCGU--GCCCCugGCCCuAGcUCCc- -3'
miRNA:   3'- -CGGCAcaUGGGGugCGGG-UCcAGGug -5'
21602 3' -60.2 NC_004812.1 + 119407 0.76 0.244042
Target:  5'- cGUCGUGgacgGCCCCGCGCUgcugacgcugCAGGUCCucGCg -3'
miRNA:   3'- -CGGCACa---UGGGGUGCGG----------GUCCAGG--UG- -5'
21602 3' -60.2 NC_004812.1 + 119372 0.69 0.579803
Target:  5'- uGCCGcccccUGcUGCCCCuccUGCCCGGGgccccCCGCg -3'
miRNA:   3'- -CGGC-----AC-AUGGGGu--GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 119232 0.66 0.746011
Target:  5'- uGCC-UGUACCCgCAgGgcccgcucCCCGGGcCCGCg -3'
miRNA:   3'- -CGGcACAUGGG-GUgC--------GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 117672 0.67 0.687405
Target:  5'- cGCCGggggGUGCcggcggaggccggCCCGCGCCCcccgGGGUCgCGg -3'
miRNA:   3'- -CGGCa---CAUG-------------GGGUGCGGG----UCCAG-GUg -5'
21602 3' -60.2 NC_004812.1 + 114679 0.77 0.192423
Target:  5'- gGCCG-GUGCCgggCGCGCCCGGGgCCGCg -3'
miRNA:   3'- -CGGCaCAUGGg--GUGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 113425 0.69 0.560258
Target:  5'- aGCC-UGUACCgcacguucgugaCCaACGCCCGGGccgCCGCg -3'
miRNA:   3'- -CGGcACAUGG------------GG-UGCGGGUCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 112188 0.66 0.746011
Target:  5'- cGCgG-GUucccGCCCgGCGcCCCGGGcuaUCCACg -3'
miRNA:   3'- -CGgCaCA----UGGGgUGC-GGGUCC---AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 110993 0.67 0.668736
Target:  5'- gGCCGU---CCCCGCGCCCAugaGGg-CGCu -3'
miRNA:   3'- -CGGCAcauGGGGUGCGGGU---CCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 109405 0.74 0.293217
Target:  5'- aGUCGgg-GCgCCGCGCCCccAGGUCCACc -3'
miRNA:   3'- -CGGCacaUGgGGUGCGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 109026 0.66 0.746011
Target:  5'- cGCCGcg-ACCCCgaGCGCCC---UCCGCg -3'
miRNA:   3'- -CGGCacaUGGGG--UGCGGGuccAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 108883 0.67 0.662817
Target:  5'- cGCCGUG-ACCCgcuucUgcugcaccagccaguACGCCCGGGggcCCGCg -3'
miRNA:   3'- -CGGCACaUGGG-----G---------------UGCGGGUCCa--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.