miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 49002 0.72 0.413719
Target:  5'- -aCGUGaACCCCgGCGgCCGGGcCCACg -3'
miRNA:   3'- cgGCACaUGGGG-UGCgGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 133106 0.72 0.413719
Target:  5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3'
miRNA:   3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 14209 0.7 0.52177
Target:  5'- gGCCGUccucgGCCCCGCcCCCGGcGgCCACg -3'
miRNA:   3'- -CGGCAca---UGGGGUGcGGGUC-CaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 76343 0.7 0.52177
Target:  5'- cGCCGc--ACCgCCAC-CgCCAGGUCCGCg -3'
miRNA:   3'- -CGGCacaUGG-GGUGcG-GGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 4194 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 130375 0.7 0.530347
Target:  5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3'
miRNA:   3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 95880 0.7 0.531303
Target:  5'- gGCCGagggGgcggGCCCCGaugccCGCCCucGGGUCUACu -3'
miRNA:   3'- -CGGCa---Ca---UGGGGU-----GCGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 69540 0.7 0.531303
Target:  5'- gGCCGccc-CCCCGCGCCCcuGcCCGCg -3'
miRNA:   3'- -CGGCacauGGGGUGCGGGucCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 154084 0.69 0.540899
Target:  5'- cGCCGUGcUG-CCCGCGCUCGacGG-CCGCg -3'
miRNA:   3'- -CGGCAC-AUgGGGUGCGGGU--CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 80318 0.69 0.544754
Target:  5'- gGCCaggGUG-GCCCCACGCguguuuaugcgacccCCGGGcCCGCa -3'
miRNA:   3'- -CGG---CACaUGGGGUGCG---------------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 150675 0.7 0.516082
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGcggcgucgcggcggcUCCGCc -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCC---------------AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 8044 0.7 0.512304
Target:  5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3'
miRNA:   3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 101857 0.71 0.448266
Target:  5'- cGCCGUGU-CCaCCGCcCCCAGGUaCCc- -3'
miRNA:   3'- -CGGCACAuGG-GGUGcGGGUCCA-GGug -5'
21602 3' -60.2 NC_004812.1 + 151853 0.71 0.448266
Target:  5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3'
miRNA:   3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 30250 0.71 0.45715
Target:  5'- cGCUGgggaaGUGCCaCCACGCCCccGGGcCCAg -3'
miRNA:   3'- -CGGCa----CAUGG-GGUGCGGG--UCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 19052 0.7 0.484351
Target:  5'- gGCCGcGgcgGCCgagaCCGCgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGCaCa--UGG----GGUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125660 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 95628 0.7 0.502909
Target:  5'- gGCCGg--GCUCCAccucCGCCCAGuUCCGCu -3'
miRNA:   3'- -CGGCacaUGGGGU----GCGGGUCcAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 151728 0.7 0.502909
Target:  5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3'
miRNA:   3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25884 0.7 0.508537
Target:  5'- gGCCGgcccucccgcgGCgCCCGCGCCCAGcG-CCGCg -3'
miRNA:   3'- -CGGCaca--------UG-GGGUGCGGGUC-CaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.