Results 81 - 100 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 127282 | 0.69 | 0.550552 |
Target: 5'- aGCCGc--GCCCCGCGCCgaCGGGagCGCg -3' miRNA: 3'- -CGGCacaUGGGGUGCGG--GUCCagGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 144698 | 0.69 | 0.550552 |
Target: 5'- cGCCGccccaccccACCCCAuCGCCgAGGUCgCGCa -3' miRNA: 3'- -CGGCaca------UGGGGU-GCGGgUCCAG-GUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 58059 | 0.69 | 0.559285 |
Target: 5'- cUCGUGgGCCCCgGCGCCCggcgccgAGG-CCGCg -3' miRNA: 3'- cGGCACaUGGGG-UGCGGG-------UCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 77821 | 0.69 | 0.559285 |
Target: 5'- aCCGcGUccacGCCCCGCGCcaggcguCCAGGgcgCCGCg -3' miRNA: 3'- cGGCaCA----UGGGGUGCG-------GGUCCa--GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 113425 | 0.69 | 0.560258 |
Target: 5'- aGCC-UGUACCgcacguucgugaCCaACGCCCGGGccgCCGCg -3' miRNA: 3'- -CGGcACAUGG------------GG-UGCGGGUCCa--GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 3822 | 0.69 | 0.560258 |
Target: 5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3' miRNA: 3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 38170 | 0.69 | 0.57001 |
Target: 5'- cGCCGgggcccgcgGgagggACCCgCGgGCCCggcAGGUCCACa -3' miRNA: 3'- -CGGCa--------Ca----UGGG-GUgCGGG---UCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 80318 | 0.69 | 0.544754 |
Target: 5'- gGCCaggGUG-GCCCCACGCguguuuaugcgacccCCGGGcCCGCa -3' miRNA: 3'- -CGG---CACaUGGGGUGCG---------------GGUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 154084 | 0.69 | 0.540899 |
Target: 5'- cGCCGUGcUG-CCCGCGCUCGacGG-CCGCg -3' miRNA: 3'- -CGGCAC-AUgGGGUGCGGGU--CCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 69540 | 0.7 | 0.531303 |
Target: 5'- gGCCGccc-CCCCGCGCCCcuGcCCGCg -3' miRNA: 3'- -CGGCacauGGGGUGCGGGucCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 151728 | 0.7 | 0.502909 |
Target: 5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3' miRNA: 3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 25884 | 0.7 | 0.508537 |
Target: 5'- gGCCGgcccucccgcgGCgCCCGCGCCCAGcG-CCGCg -3' miRNA: 3'- -CGGCaca--------UG-GGGUGCGGGUC-CaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 8044 | 0.7 | 0.512304 |
Target: 5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3' miRNA: 3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 150675 | 0.7 | 0.516082 |
Target: 5'- cGCCG-GUcgcCCCCGCGCuCCGGGcggcgucgcggcggcUCCGCc -3' miRNA: 3'- -CGGCaCAu--GGGGUGCG-GGUCC---------------AGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 14209 | 0.7 | 0.52177 |
Target: 5'- gGCCGUccucgGCCCCGCcCCCGGcGgCCACg -3' miRNA: 3'- -CGGCAca---UGGGGUGcGGGUC-CaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 76343 | 0.7 | 0.52177 |
Target: 5'- cGCCGc--ACCgCCAC-CgCCAGGUCCGCg -3' miRNA: 3'- -CGGCacaUGG-GGUGcG-GGUCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 4194 | 0.7 | 0.52177 |
Target: 5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3' miRNA: 3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 130375 | 0.7 | 0.530347 |
Target: 5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3' miRNA: 3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 95880 | 0.7 | 0.531303 |
Target: 5'- gGCCGagggGgcggGCCCCGaugccCGCCCucGGGUCUACu -3' miRNA: 3'- -CGGCa---Ca---UGGGGU-----GCGGG--UCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 94886 | 0.69 | 0.57001 |
Target: 5'- cGCCGcgGgaccucaccACCCCGCuCCUcgGGGUCCACg -3' miRNA: 3'- -CGGCa-Ca--------UGGGGUGcGGG--UCCAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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