miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 35095 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 50115 0.72 0.421349
Target:  5'- cGCCGcGga-CCCGCGCCCcagccacGGGUUCGCg -3'
miRNA:   3'- -CGGCaCaugGGGUGCGGG-------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 40904 0.78 0.183322
Target:  5'- uGCCGUGU-CCCCAUGCCCuGGGcUCGCc -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGG-UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 48215 0.7 0.52177
Target:  5'- cGCCGgcgcgagcgGaGCCCCGCgGCCCAGGgccUCCuGCa -3'
miRNA:   3'- -CGGCa--------CaUGGGGUG-CGGGUCC---AGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 99699 0.8 0.136349
Target:  5'- cGCCGUGcggcgGCgCCUGCGCCCAGGgcuggCCGCa -3'
miRNA:   3'- -CGGCACa----UG-GGGUGCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 46161 0.68 0.599488
Target:  5'- gGCUGUGU-CCgugggcguaCACGCCCGuGUCCACc -3'
miRNA:   3'- -CGGCACAuGGg--------GUGCGGGUcCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 140385 0.75 0.255655
Target:  5'- gGCCGgccgGCUCCGCcuccggcgcgcgGCCCGGGUCCGCc -3'
miRNA:   3'- -CGGCaca-UGGGGUG------------CGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 85623 0.69 0.589631
Target:  5'- gGCCGUcuggaggcGUuccgGCCCCACGCCuCGGGg-CGCu -3'
miRNA:   3'- -CGGCA--------CA----UGGGGUGCGG-GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 79113 0.69 0.579803
Target:  5'- uGCaggaaGUGgcCCgCCGgGCCCGGGUCC-Ca -3'
miRNA:   3'- -CGg----CACauGG-GGUgCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 34723 0.69 0.560258
Target:  5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3'
miRNA:   3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 1774 0.69 0.550552
Target:  5'- aGCCGc--GCCCCGCGCCgaCGGGagCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGG--GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 39113 0.69 0.547651
Target:  5'- gGCCGgggGCCCgcgucggaCGCGCCCggcggccgggccggGGGUCCGCc -3'
miRNA:   3'- -CGGCacaUGGG--------GUGCGGG--------------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25166 0.7 0.531303
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGgcggcgUCGCg -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 107605 0.7 0.512304
Target:  5'- -gCGUGgGCCCgGcCGCCgGGGUUCACg -3'
miRNA:   3'- cgGCACaUGGGgU-GCGGgUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 26220 0.7 0.502909
Target:  5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3'
miRNA:   3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 156561 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 26345 0.71 0.448266
Target:  5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3'
miRNA:   3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 134591 0.72 0.413719
Target:  5'- cGUCGgggaGUACgCCAUGCCCGGGUUCuCg -3'
miRNA:   3'- -CGGCa---CAUGgGGUGCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 49072 0.73 0.365099
Target:  5'- cGCCGacGUGCUCguCGCCCAGG-CCAUc -3'
miRNA:   3'- -CGGCa-CAUGGGguGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25624 0.74 0.30666
Target:  5'- cGCCGUGU-CCCCGCGCCagcuGGcCCuGCu -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGgu--CCaGG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.