miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 25166 0.7 0.531303
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGgcggcgUCGCg -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 14676 0.69 0.550552
Target:  5'- gGCCGUGccACCCCGCGgCCUgcAGGcuguagacggCCACg -3'
miRNA:   3'- -CGGCACa-UGGGGUGC-GGG--UCCa---------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 151093 0.75 0.267719
Target:  5'- cGCCGUGU-CCCUgcugcgcgGCGCCCGGcGUCCu- -3'
miRNA:   3'- -CGGCACAuGGGG--------UGCGGGUC-CAGGug -5'
21602 3' -60.2 NC_004812.1 + 27578 0.74 0.327702
Target:  5'- cGCCGcg-GCCCCGCcCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGcGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 21948 0.72 0.405341
Target:  5'- gGCCGUGguacACgCCACGCCguGGUgcUCGCg -3'
miRNA:   3'- -CGGCACa---UGgGGUGCGGguCCA--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 7598 0.72 0.413719
Target:  5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3'
miRNA:   3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 10984 0.71 0.466128
Target:  5'- gGCCGUGcuggcgcGCCCCgGCGgaCCaCGGGUCCGCc -3'
miRNA:   3'- -CGGCACa------UGGGG-UGC--GG-GUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 106112 0.7 0.49359
Target:  5'- cGCgCGgGUgagcGCCUCgGCGCCCGGcGUCCACa -3'
miRNA:   3'- -CG-GCaCA----UGGGG-UGCGGGUC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 55942 0.7 0.502909
Target:  5'- cGCCGg--GCCCgACGCCgAGGcCCGg -3'
miRNA:   3'- -CGGCacaUGGGgUGCGGgUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 38945 0.7 0.512304
Target:  5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3'
miRNA:   3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 79763 0.67 0.658867
Target:  5'- -aCGUGccUGCCCgACGCCgcgCAGG-CCGCg -3'
miRNA:   3'- cgGCAC--AUGGGgUGCGG---GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 77419 0.68 0.648977
Target:  5'- -aCGUGgACCCCGcCGUCCAGccucgaagaccuGUCCGCc -3'
miRNA:   3'- cgGCACaUGGGGU-GCGGGUC------------CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 78844 0.69 0.560258
Target:  5'- gGCgGUGUcCCCCGaggaGCCCGGGgagggcggaggCCGCc -3'
miRNA:   3'- -CGgCACAuGGGGUg---CGGGUCCa----------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 141374 0.69 0.560258
Target:  5'- cGCCGgGUccGCCCUGCGCgaagcagucggCCAGG-CCGCg -3'
miRNA:   3'- -CGGCaCA--UGGGGUGCG-----------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 85623 0.69 0.589631
Target:  5'- gGCCGUcuggaggcGUuccgGCCCCACGCCuCGGGg-CGCu -3'
miRNA:   3'- -CGGCA--------CA----UGGGGUGCGG-GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 46161 0.68 0.599488
Target:  5'- gGCUGUGU-CCgugggcguaCACGCCCGuGUCCACc -3'
miRNA:   3'- -CGGCACAuGGg--------GUGCGGGUcCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 75401 0.68 0.609368
Target:  5'- cGCCGgggGCaUCCACGCCCGcGcGUCCAg -3'
miRNA:   3'- -CGGCacaUG-GGGUGCGGGU-C-CAGGUg -5'
21602 3' -60.2 NC_004812.1 + 137815 0.68 0.619264
Target:  5'- cGCCGcggagcaGgcCCCCugGCCCcgggAGGUCCugGCg -3'
miRNA:   3'- -CGGCa------CauGGGGugCGGG----UCCAGG--UG- -5'
21602 3' -60.2 NC_004812.1 + 55131 0.68 0.639076
Target:  5'- cGCCGg--ACCCUGCGCCaGGG-CCAg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGgUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 125498 0.68 0.647988
Target:  5'- uGCCGcuuucUGgacGCCCCGcCGCCCaaugccacccgcaGGGUCUGCg -3'
miRNA:   3'- -CGGC-----ACa--UGGGGU-GCGGG-------------UCCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.