miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 62266 0.66 0.755337
Target:  5'- cGCCGcccGCCCCGCGC--AGG-CCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGggUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 43755 0.66 0.755337
Target:  5'- uGgCGUGaGCCCagcgcgugaGCGCCgAGG-CCACg -3'
miRNA:   3'- -CgGCACaUGGGg--------UGCGGgUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 153113 0.66 0.755337
Target:  5'- gGCCccg-GgCCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGcacaUgGGGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3648 0.66 0.755337
Target:  5'- aGCCcag-GCCCgGCGCCCAaGUCC-Cg -3'
miRNA:   3'- -CGGcacaUGGGgUGCGGGUcCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 81885 0.66 0.755337
Target:  5'- gGCCGaag-UCCCGgGCCCAGG-CCAg -3'
miRNA:   3'- -CGGCacauGGGGUgCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 126707 0.66 0.755337
Target:  5'- cGCCGcc-GCCaCCACGCCC-GGcCCGg -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGuCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 124484 0.66 0.746011
Target:  5'- gGCCGUGgcguccgGCCUC-CGCCaGGGcgCCAUg -3'
miRNA:   3'- -CGGCACa------UGGGGuGCGGgUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 65263 0.66 0.746011
Target:  5'- -gCGUcUGCCCCAC-CUCAcGGUCUACu -3'
miRNA:   3'- cgGCAcAUGGGGUGcGGGU-CCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 32134 0.66 0.746011
Target:  5'- gGCCGg--ACgCCACGgCCGGGcccccgCCGCg -3'
miRNA:   3'- -CGGCacaUGgGGUGCgGGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 112188 0.66 0.746011
Target:  5'- cGCgG-GUucccGCCCgGCGcCCCGGGcuaUCCACg -3'
miRNA:   3'- -CGgCaCA----UGGGgUGC-GGGUCC---AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 44909 0.66 0.746011
Target:  5'- cGCCGUG-GCCCagauCGCCagcGG-CCACg -3'
miRNA:   3'- -CGGCACaUGGGgu--GCGGgu-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 139387 0.66 0.746011
Target:  5'- uCCGUGU-CCCC-CGCuCCAGcGgcaccggCCGCg -3'
miRNA:   3'- cGGCACAuGGGGuGCG-GGUC-Ca------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 52584 0.66 0.746011
Target:  5'- cGCCGcGacgGCCCCgaggccguACGCCaCGGG-CCGCc -3'
miRNA:   3'- -CGGCaCa--UGGGG--------UGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3874 0.66 0.746011
Target:  5'- cGCCGcg-GCCCgcaaGCGCCCGGccUCCGCc -3'
miRNA:   3'- -CGGCacaUGGGg---UGCGGGUCc-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 150133 0.66 0.746011
Target:  5'- uGCC-UGUACCCgCAgGgcccgcucCCCGGGcCCGCg -3'
miRNA:   3'- -CGGcACAUGGG-GUgC--------GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 34775 0.66 0.746011
Target:  5'- cGCCGcg-GCCCgcaaGCGCCCGGccUCCGCc -3'
miRNA:   3'- -CGGCacaUGGGg---UGCGGGUCc-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 119232 0.66 0.746011
Target:  5'- uGCC-UGUACCCgCAgGgcccgcucCCCGGGcCCGCg -3'
miRNA:   3'- -CGGcACAUGGG-GUgC--------GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 109026 0.66 0.746011
Target:  5'- cGCCGcg-ACCCCgaGCGCCC---UCCGCg -3'
miRNA:   3'- -CGGCacaUGGGG--UGCGGGuccAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 139833 0.66 0.746011
Target:  5'- cGCCucgGccGCCCCACGCgucuUCGGGcCCGCg -3'
miRNA:   3'- -CGGca-Ca-UGGGGUGCG----GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 72191 0.66 0.746011
Target:  5'- gGCCGgggGCCCCGgguCGUCgCGGGgcgUCCGCg -3'
miRNA:   3'- -CGGCacaUGGGGU---GCGG-GUCC---AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.