miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 125281 0.67 0.950781
Target:  5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 7922 0.67 0.950781
Target:  5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3'
miRNA:   3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 156428 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 18 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 89132 0.67 0.958648
Target:  5'- cGGGCgccagcccGCG-GAcGCGUGggGa-CACGCc -3'
miRNA:   3'- -CCCGa-------CGCaCU-CGCACuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 156182 0.67 0.950781
Target:  5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 18817 0.67 0.950781
Target:  5'- gGGGCggGUGUGcGGCGggcgGcGGUUgCGCGCc -3'
miRNA:   3'- -CCCGa-CGCAC-UCGCa---CuUCAA-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 127909 0.67 0.946496
Target:  5'- gGGGCgGCGgucGCGaaauccagGAAGggCACGCg -3'
miRNA:   3'- -CCCGaCGCacuCGCa-------CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153633 0.67 0.946055
Target:  5'- cGGGCcggcccaUGCGggcGGGCGgGGAGagggCGCGCa -3'
miRNA:   3'- -CCCG-------ACGCa--CUCGCaCUUCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146470 0.67 0.958648
Target:  5'- uGGGggGgGUGGGCGUaccGGgccUCACGCu -3'
miRNA:   3'- -CCCgaCgCACUCGCAcu-UCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 81792 0.67 0.962238
Target:  5'- uGGGaCgagGUGUGGGCGc--GGUUCGgGCg -3'
miRNA:   3'- -CCC-Ga--CGCACUCGCacuUCAAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 88234 0.67 0.962238
Target:  5'- uGGGCgGCGgGGGCGUuu-GacCGCGCg -3'
miRNA:   3'- -CCCGaCGCaCUCGCAcuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 127556 0.67 0.941973
Target:  5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3'
miRNA:   3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 147896 0.67 0.941973
Target:  5'- gGGGCUcGCGagggGGGCGcgGAGGgcgUCcCGCc -3'
miRNA:   3'- -CCCGA-CGCa---CUCGCa-CUUCa--AGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 143444 0.67 0.941973
Target:  5'- uGGGgaGC-UGcGCGUGuuGUcUCGCGCg -3'
miRNA:   3'- -CCCgaCGcACuCGCACuuCA-AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 38823 0.67 0.950781
Target:  5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3'
miRNA:   3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 2047 0.67 0.941973
Target:  5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3'
miRNA:   3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153340 0.67 0.954831
Target:  5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3'
miRNA:   3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 27228 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 94121 0.67 0.962238
Target:  5'- cGGGC-GCGUGGuccGCGccggcccaGAGGcgCGCGCg -3'
miRNA:   3'- -CCCGaCGCACU---CGCa-------CUUCaaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.