miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 109741 0.72 0.774927
Target:  5'- gGGGCUGCGacUGA-CGUGgcGcgugCACGCg -3'
miRNA:   3'- -CCCGACGC--ACUcGCACuuCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 145807 0.71 0.828868
Target:  5'- cGGGCUcgGUGUGGGCGgcGggGUcggcggccCACGCc -3'
miRNA:   3'- -CCCGA--CGCACUCGCa-CuuCAa-------GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 30039 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155548 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 78175 0.71 0.820286
Target:  5'- cGGGCUGgaUGAGCGgGAGGU--GCGCc -3'
miRNA:   3'- -CCCGACgcACUCGCaCUUCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 103213 0.71 0.820286
Target:  5'- -cGCUGCGgacGAGCG-GcAGGUUCAgGCg -3'
miRNA:   3'- ccCGACGCa--CUCGCaC-UUCAAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 17771 0.71 0.828868
Target:  5'- uGGGCggGCGUGggGGCGagaacGggGUgggugCGCGCa -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCa----CuuCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 100457 0.71 0.828868
Target:  5'- aGGGCgugGUGcGGGCGUaGAGGggCGCGg -3'
miRNA:   3'- -CCCGa--CGCaCUCGCA-CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 35226 0.7 0.845477
Target:  5'- gGGGCgGUGUu-GCG-GAGGUUCGCGg -3'
miRNA:   3'- -CCCGaCGCAcuCGCaCUUCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 106774 0.7 0.837267
Target:  5'- gGGGCgGCGUcGGGCGgggcgcgcggGAGGgggccUCGCGCc -3'
miRNA:   3'- -CCCGaCGCA-CUCGCa---------CUUCa----AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 44948 0.7 0.837267
Target:  5'- cGGGgaGCGguacacGAGCGccGAGGgggCGCGCa -3'
miRNA:   3'- -CCCgaCGCa-----CUCGCa-CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 5803 0.7 0.861295
Target:  5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3'
miRNA:   3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 96732 0.7 0.861295
Target:  5'- aGGGCUcGcCGUGGGCGUcGgcGUcUACGUg -3'
miRNA:   3'- -CCCGA-C-GCACUCGCA-CuuCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146757 0.7 0.866634
Target:  5'- cGGGCggacggucgGCGUGAGCGUcgucgaggcccaacGAGGgcCGCGa -3'
miRNA:   3'- -CCCGa--------CGCACUCGCA--------------CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 36704 0.7 0.861295
Target:  5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3'
miRNA:   3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 70876 0.7 0.86889
Target:  5'- uGGCUGCGcgggggGGGCGggGAGGgggcggggaucUCGCGCg -3'
miRNA:   3'- cCCGACGCa-----CUCGCa-CUUCa----------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 13940 0.69 0.909734
Target:  5'- cGGuCUGCGUGGGCG---AGccCACGCa -3'
miRNA:   3'- cCC-GACGCACUCGCacuUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74925 0.69 0.909734
Target:  5'- aGGC-GCGcGAGCGggucgggGGAGccgUCGCGCg -3'
miRNA:   3'- cCCGaCGCaCUCGCa------CUUCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 7665 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 122554 0.69 0.909734
Target:  5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3'
miRNA:   3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.