miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 155224 0.69 0.903511
Target:  5'- gGGGCgcgGCGcgGGGCG-GGccgUCGCGCa -3'
miRNA:   3'- -CCCGa--CGCa-CUCGCaCUucaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 38566 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 7665 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 142471 0.69 0.909734
Target:  5'- uGGGCgaggGCGcccUGAcGCGgcuggcGgcGUUCACGCa -3'
miRNA:   3'- -CCCGa---CGC---ACU-CGCa-----CuuCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74925 0.69 0.909734
Target:  5'- aGGC-GCGcGAGCGggucgggGGAGccgUCGCGCg -3'
miRNA:   3'- cCCGaCGCaCUCGCa------CUUCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153455 0.69 0.909734
Target:  5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3'
miRNA:   3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 122554 0.69 0.909734
Target:  5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3'
miRNA:   3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 13940 0.69 0.909734
Target:  5'- cGGuCUGCGUGGGCG---AGccCACGCa -3'
miRNA:   3'- cCC-GACGCACUCGCacuUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 53771 0.68 0.915716
Target:  5'- aGGUUGCGcGucgccGGCGUGGAGg-CGCGCc -3'
miRNA:   3'- cCCGACGCaC-----UCGCACUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153221 0.68 0.92587
Target:  5'- cGGGCgGCGagucgccuaucacgaUGGGCGcGggGUUCccggcgggggccgggGCGCg -3'
miRNA:   3'- -CCCGaCGC---------------ACUCGCaCuuCAAG---------------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 122320 0.68 0.92587
Target:  5'- cGGGCgGCGagucgccuaucacgaUGGGCGcGggGUUCccggcgggggccgggGCGCg -3'
miRNA:   3'- -CCCGaCGC---------------ACUCGCaCuuCAAG---------------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 122313 0.68 0.92695
Target:  5'- gGGGCgaacGCGUGGugcGCGUGggGgguggC-CGCc -3'
miRNA:   3'- -CCCGa---CGCACU---CGCACuuCaa---GuGCG- -5'
21602 5' -53.4 NC_004812.1 + 122732 0.68 0.931687
Target:  5'- cGGGCcggcccaUGCGggcGGGCGggaGAGggCGCGCa -3'
miRNA:   3'- -CCCG-------ACGCa--CUCGCac-UUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 43064 0.68 0.932201
Target:  5'- gGGGgUGCGgGGGCGgugGggGUgcggggacgaACGCa -3'
miRNA:   3'- -CCCgACGCaCUCGCa--CuuCAag--------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 113148 0.68 0.932201
Target:  5'- gGGGCU-CGUGGGgGcGguGUUUAUGCg -3'
miRNA:   3'- -CCCGAcGCACUCgCaCuuCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 15919 0.68 0.936719
Target:  5'- cGGCggGCG-GGG-GUGggGUcgcggggUCACGCg -3'
miRNA:   3'- cCCGa-CGCaCUCgCACuuCA-------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 86164 0.68 0.937208
Target:  5'- cGGUUGCGUGuGCGcGAcugcGGUUCGucCGUg -3'
miRNA:   3'- cCCGACGCACuCGCaCU----UCAAGU--GCG- -5'
21602 5' -53.4 NC_004812.1 + 112544 0.68 0.937208
Target:  5'- cGGGCgccCGccGAGCG-GggGggCGCGCc -3'
miRNA:   3'- -CCCGac-GCa-CUCGCaCuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 143444 0.67 0.941973
Target:  5'- uGGGgaGC-UGcGCGUGuuGUcUCGCGCg -3'
miRNA:   3'- -CCCgaCGcACuCGCACuuCA-AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 147896 0.67 0.941973
Target:  5'- gGGGCUcGCGagggGGGCGcgGAGGgcgUCcCGCc -3'
miRNA:   3'- -CCCGA-CGCa---CUCGCa-CUUCa--AGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.