miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 94688 0.66 0.968757
Target:  5'- cGGgUGCGUGGGUGgggcGAGGUcUugGUu -3'
miRNA:   3'- cCCgACGCACUCGCa---CUUCAaGugCG- -5'
21602 5' -53.4 NC_004812.1 + 95514 0.66 0.977212
Target:  5'- gGGGCgccgccucgaccccgGCG-GGGCGgcccGggGcgUCGCGCc -3'
miRNA:   3'- -CCCGa--------------CGCaCUCGCa---CuuCa-AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 96732 0.7 0.861295
Target:  5'- aGGGCUcGcCGUGGGCGUcGgcGUcUACGUg -3'
miRNA:   3'- -CCCGA-C-GCACUCGCA-CuuCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 96808 0.66 0.974431
Target:  5'- cGGGCgaacccgcGCGUaGAGgGUGAGGgcgC-CGCc -3'
miRNA:   3'- -CCCGa-------CGCA-CUCgCACUUCaa-GuGCG- -5'
21602 5' -53.4 NC_004812.1 + 100149 0.66 0.971696
Target:  5'- cGGGCgGCG-GGGCG-GGGcucaUCGCGCc -3'
miRNA:   3'- -CCCGaCGCaCUCGCaCUUca--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 100448 0.66 0.968757
Target:  5'- cGGGCUGUacgccaucaGcGAGC-UGcGGUUCugGCu -3'
miRNA:   3'- -CCCGACG---------CaCUCGcACuUCAAGugCG- -5'
21602 5' -53.4 NC_004812.1 + 100457 0.71 0.828868
Target:  5'- aGGGCgugGUGcGGGCGUaGAGGggCGCGg -3'
miRNA:   3'- -CCCGa--CGCaCUCGCA-CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 100865 0.66 0.968757
Target:  5'- gGGGCcGCGgggGAgGCGggGGAGggCGcCGCg -3'
miRNA:   3'- -CCCGaCGCa--CU-CGCa-CUUCaaGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 100897 0.67 0.958648
Target:  5'- cGGGgUGCGccGAGCGc-GGGUgcaggCGCGCg -3'
miRNA:   3'- -CCCgACGCa-CUCGCacUUCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 103149 0.67 0.962238
Target:  5'- cGGGCccgcUGCGUcugGAGCGcGggGgccgccgUCAgCGCg -3'
miRNA:   3'- -CCCG----ACGCA---CUCGCaCuuCa------AGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 103213 0.71 0.820286
Target:  5'- -cGCUGCGgacGAGCG-GcAGGUUCAgGCg -3'
miRNA:   3'- ccCGACGCa--CUCGCaC-UUCAAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 105137 0.67 0.956385
Target:  5'- aGGGCUGCGguccgggaacgaggGGGaCGUuggcGggGgUCGCGUg -3'
miRNA:   3'- -CCCGACGCa-------------CUC-GCA----CuuCaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 106774 0.7 0.837267
Target:  5'- gGGGCgGCGUcGGGCGgggcgcgcggGAGGgggccUCGCGCc -3'
miRNA:   3'- -CCCGaCGCA-CUCGCa---------CUUCa----AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 107184 0.73 0.696079
Target:  5'- cGGGCgaGCG-GAGCGUGgcGgUCGgGCg -3'
miRNA:   3'- -CCCGa-CGCaCUCGCACuuCaAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 109021 0.67 0.954831
Target:  5'- cGGCUGCcUGcGCGUGucggaucgcGAGUucaUCACGUa -3'
miRNA:   3'- cCCGACGcACuCGCAC---------UUCA---AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 109741 0.72 0.774927
Target:  5'- gGGGCUGCGacUGA-CGUGgcGcgugCACGCg -3'
miRNA:   3'- -CCCGACGC--ACUcGCACuuCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 110760 0.66 0.972814
Target:  5'- gGGGCguuacgacgcGCGaUGGGgGUGggGgacacgguggaggcgUUCGCGCu -3'
miRNA:   3'- -CCCGa---------CGC-ACUCgCACuuC---------------AAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 112544 0.68 0.937208
Target:  5'- cGGGCgccCGccGAGCG-GggGggCGCGCc -3'
miRNA:   3'- -CCCGac-GCa-CUCGCaCuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 113148 0.68 0.932201
Target:  5'- gGGGCU-CGUGGGgGcGguGUUUAUGCg -3'
miRNA:   3'- -CCCGAcGCACUCgCaCuuCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 119689 0.69 0.890354
Target:  5'- gGGGCUGCGgGAGC-UGg----CGCGCa -3'
miRNA:   3'- -CCCGACGCaCUCGcACuucaaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.