miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 144418 0.66 0.974431
Target:  5'- cGGC-GCGacGGCGgcucgGAAGUUCcCGCg -3'
miRNA:   3'- cCCGaCGCacUCGCa----CUUCAAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 143932 0.72 0.743136
Target:  5'- uGGGUUGCGUGGGagGUGggGgcggggugggaggaGCGCg -3'
miRNA:   3'- -CCCGACGCACUCg-CACuuCaag-----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 143444 0.67 0.941973
Target:  5'- uGGGgaGC-UGcGCGUGuuGUcUCGCGCg -3'
miRNA:   3'- -CCCgaCGcACuCGCACuuCA-AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 142649 0.67 0.958648
Target:  5'- cGGGCUGCGccccguguUGGucuGCGUGGGcucgccCACGCa -3'
miRNA:   3'- -CCCGACGC--------ACU---CGCACUUcaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 142471 0.69 0.909734
Target:  5'- uGGGCgaggGCGcccUGAcGCGgcuggcGgcGUUCACGCa -3'
miRNA:   3'- -CCCGa---CGC---ACU-CGCa-----CuuCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 138666 0.73 0.706225
Target:  5'- cGGGcCUGUGgggcgagGGGUGUG-GGUUCGCGUa -3'
miRNA:   3'- -CCC-GACGCa------CUCGCACuUCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 134091 0.66 0.965606
Target:  5'- gGGGCgccgacgucGCG-GuGCGUGAcgguGGUcCGCGCg -3'
miRNA:   3'- -CCCGa--------CGCaCuCGCACU----UCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 127909 0.67 0.946496
Target:  5'- gGGGCgGCGgucGCGaaauccagGAAGggCACGCg -3'
miRNA:   3'- -CCCGaCGCacuCGCa-------CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 127556 0.67 0.941973
Target:  5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3'
miRNA:   3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 125527 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 125281 0.67 0.950781
Target:  5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 124323 0.69 0.903511
Target:  5'- gGGGCgcgGCGcgGGGCG-GGccgUCGCGCa -3'
miRNA:   3'- -CCCGa--CGCa-CUCGCaCUucaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 122732 0.68 0.931687
Target:  5'- cGGGCcggcccaUGCGggcGGGCGggaGAGggCGCGCa -3'
miRNA:   3'- -CCCG-------ACGCa--CUCGCac-UUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 122554 0.69 0.909734
Target:  5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3'
miRNA:   3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 122439 0.67 0.954831
Target:  5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3'
miRNA:   3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 122320 0.68 0.92587
Target:  5'- cGGGCgGCGagucgccuaucacgaUGGGCGcGggGUUCccggcgggggccgggGCGCg -3'
miRNA:   3'- -CCCGaCGC---------------ACUCGCaCuuCAAG---------------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 122313 0.68 0.92695
Target:  5'- gGGGCgaacGCGUGGugcGCGUGggGgguggC-CGCc -3'
miRNA:   3'- -CCCGa---CGCACU---CGCACuuCaa---GuGCG- -5'
21602 5' -53.4 NC_004812.1 + 120886 0.67 0.954831
Target:  5'- gGGGCgggGCG-GAGaCGcGggGgUCGCGUc -3'
miRNA:   3'- -CCCGa--CGCaCUC-GCaCuuCaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 120045 0.66 0.974431
Target:  5'- cGGCaacGUGgaccUGGGCGUGggGUaCACGg -3'
miRNA:   3'- cCCGa--CGC----ACUCGCACuuCAaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 120008 0.73 0.706225
Target:  5'- cGGGCgg---GGGCGUGAAcUUCACGCu -3'
miRNA:   3'- -CCCGacgcaCUCGCACUUcAAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.