miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 94321 0.67 0.962238
Target:  5'- cGGCUGCGcggcggUGAccGCGUG-GGUcuccgCGCGCg -3'
miRNA:   3'- cCCGACGC------ACU--CGCACuUCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 94121 0.67 0.962238
Target:  5'- cGGGC-GCGUGGuccGCGccggcccaGAGGcgCGCGCg -3'
miRNA:   3'- -CCCGaCGCACU---CGCa-------CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 93122 0.76 0.562386
Target:  5'- cGGGCggcgGCGUcuGCGUGAcGUUCGuCGCg -3'
miRNA:   3'- -CCCGa---CGCAcuCGCACUuCAAGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 91406 0.66 0.971696
Target:  5'- cGGC--CGUGAGCacGAAG-UCGCGCa -3'
miRNA:   3'- cCCGacGCACUCGcaCUUCaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 89132 0.67 0.958648
Target:  5'- cGGGCgccagcccGCG-GAcGCGUGggGa-CACGCc -3'
miRNA:   3'- -CCCGa-------CGCaCU-CGCACuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 89047 0.66 0.974431
Target:  5'- aGGGCcgGCGUGgcGGCGgcgaGAGcugcugCACGCg -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCac--UUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 88234 0.67 0.962238
Target:  5'- uGGGCgGCGgGGGCGUuu-GacCGCGCg -3'
miRNA:   3'- -CCCGaCGCaCUCGCAcuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 87258 0.66 0.971696
Target:  5'- aGGGCUcGaCGaUGAGCugGUGGAGcagcugCGCGCc -3'
miRNA:   3'- -CCCGA-C-GC-ACUCG--CACUUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 86532 0.74 0.675632
Target:  5'- cGGCUGCagcuccAGCGUGuGGUUCGCGUg -3'
miRNA:   3'- cCCGACGcac---UCGCACuUCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 86164 0.68 0.937208
Target:  5'- cGGUUGCGUGuGCGcGAcugcGGUUCGucCGUg -3'
miRNA:   3'- cCCGACGCACuCGCaCU----UCAAGU--GCG- -5'
21602 5' -53.4 NC_004812.1 + 84638 0.66 0.964619
Target:  5'- gGGGC-GCGUGAGCcucccgcggCGCGCg -3'
miRNA:   3'- -CCCGaCGCACUCGcacuucaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 83065 0.67 0.954831
Target:  5'- aGGGCUcGCGUcAGCGgggUGAGcgUCGCGUc -3'
miRNA:   3'- -CCCGA-CGCAcUCGC---ACUUcaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 81917 0.66 0.971696
Target:  5'- aGGGCgaacGCGaucGAGCGgggGAGGUagGCGg -3'
miRNA:   3'- -CCCGa---CGCa--CUCGCa--CUUCAagUGCg -5'
21602 5' -53.4 NC_004812.1 + 81792 0.67 0.962238
Target:  5'- uGGGaCgagGUGUGGGCGc--GGUUCGgGCg -3'
miRNA:   3'- -CCC-Ga--CGCACUCGCacuUCAAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 78175 0.71 0.820286
Target:  5'- cGGGCUGgaUGAGCGgGAGGU--GCGCc -3'
miRNA:   3'- -CCCGACgcACUCGCaCUUCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74925 0.69 0.909734
Target:  5'- aGGC-GCGcGAGCGggucgggGGAGccgUCGCGCg -3'
miRNA:   3'- cCCGaCGCaCUCGCa------CUUCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74357 0.66 0.971696
Target:  5'- gGGGCgcggGCGcGGGCGgcGggGUcccgccCGCGCc -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa-CuuCAa-----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 73639 0.72 0.784296
Target:  5'- -cGCcGCGggGAGCGUGAGGUgCAUGUa -3'
miRNA:   3'- ccCGaCGCa-CUCGCACUUCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 70876 0.7 0.86889
Target:  5'- uGGCUGCGcgggggGGGCGggGAGGgggcggggaucUCGCGCg -3'
miRNA:   3'- cCCGACGCa-----CUCGCa-CUUCa----------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 64168 0.66 0.968757
Target:  5'- cGGGCUccgcGCGggaGGGCGgcgGggGccggCACGUg -3'
miRNA:   3'- -CCCGA----CGCa--CUCGCa--CuuCaa--GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.