miRNA display CGI


Results 41 - 60 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 146645 0.73 0.716308
Target:  5'- gGGGUUGUGUGGGUGggGAGGggaGCGUu -3'
miRNA:   3'- -CCCGACGCACUCGCa-CUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 107184 0.73 0.696079
Target:  5'- cGGGCgaGCG-GAGCGUGgcGgUCGgGCg -3'
miRNA:   3'- -CCCGa-CGCaCUCGCACuuCaAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 4802 0.74 0.665349
Target:  5'- aGGGCUgGUGcGGGCGcGggGUcggCACGCg -3'
miRNA:   3'- -CCCGA-CGCaCUCGCaCuuCAa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 40566 0.75 0.603376
Target:  5'- cGGGCUGUGUGuGCGUcgGGAG---GCGCg -3'
miRNA:   3'- -CCCGACGCACuCGCA--CUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 93122 0.76 0.562386
Target:  5'- cGGGCggcgGCGUcuGCGUGAcGUUCGuCGCg -3'
miRNA:   3'- -CCCGa---CGCAcuCGCACUuCAAGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 155548 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 78175 0.71 0.820286
Target:  5'- cGGGCUGgaUGAGCGgGAGGU--GCGCc -3'
miRNA:   3'- -CCCGACgcACUCGCaCUUCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74925 0.69 0.909734
Target:  5'- aGGC-GCGcGAGCGggucgggGGAGccgUCGCGCg -3'
miRNA:   3'- cCCGaCGCaCUCGCa------CUUCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 7665 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 124323 0.69 0.903511
Target:  5'- gGGGCgcgGCGcgGGGCG-GGccgUCGCGCa -3'
miRNA:   3'- -CCCGa--CGCa-CUCGCaCUucaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 12233 0.69 0.903511
Target:  5'- uGGcGCUcGCGcaGGGgGuUGAGGUUCAUGCg -3'
miRNA:   3'- -CC-CGA-CGCa-CUCgC-ACUUCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 41028 0.69 0.89705
Target:  5'- cGGGUcGcCGUGGGgGUGggGUg-GCGUa -3'
miRNA:   3'- -CCCGaC-GCACUCgCACuuCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 70876 0.7 0.86889
Target:  5'- uGGCUGCGcgggggGGGCGggGAGGgggcggggaucUCGCGCg -3'
miRNA:   3'- cCCGACGCa-----CUCGCa-CUUCa----------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 5803 0.7 0.861295
Target:  5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3'
miRNA:   3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 96732 0.7 0.861295
Target:  5'- aGGGCUcGcCGUGGGCGUcGgcGUcUACGUg -3'
miRNA:   3'- -CCCGA-C-GCACUCGCA-CuuCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 35226 0.7 0.845477
Target:  5'- gGGGCgGUGUu-GCG-GAGGUUCGCGg -3'
miRNA:   3'- -CCCGaCGCAcuCGCaCUUCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 44948 0.7 0.837267
Target:  5'- cGGGgaGCGguacacGAGCGccGAGGgggCGCGCa -3'
miRNA:   3'- -CCCgaCGCa-----CUCGCa-CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 100457 0.71 0.828868
Target:  5'- aGGGCgugGUGcGGGCGUaGAGGggCGCGg -3'
miRNA:   3'- -CCCGa--CGCaCUCGCA-CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 17771 0.71 0.828868
Target:  5'- uGGGCggGCGUGggGGCGagaacGggGUgggugCGCGCa -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCa----CuuCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 103213 0.71 0.820286
Target:  5'- -cGCUGCGgacGAGCG-GcAGGUUCAgGCg -3'
miRNA:   3'- ccCGACGCa--CUCGCaC-UUCAAGUgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.