Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21602 | 5' | -53.4 | NC_004812.1 | + | 146470 | 0.67 | 0.958648 |
Target: 5'- uGGGggGgGUGGGCGUaccGGgccUCACGCu -3' miRNA: 3'- -CCCgaCgCACUCGCAcu-UCa--AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 142649 | 0.67 | 0.958648 |
Target: 5'- cGGGCUGCGccccguguUGGucuGCGUGGGcucgccCACGCa -3' miRNA: 3'- -CCCGACGC--------ACU---CGCACUUcaa---GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 89132 | 0.67 | 0.958648 |
Target: 5'- cGGGCgccagcccGCG-GAcGCGUGggGa-CACGCc -3' miRNA: 3'- -CCCGa-------CGCaCU-CGCACuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 153221 | 0.68 | 0.92587 |
Target: 5'- cGGGCgGCGagucgccuaucacgaUGGGCGcGggGUUCccggcgggggccgggGCGCg -3' miRNA: 3'- -CCCGaCGC---------------ACUCGCaCuuCAAG---------------UGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 153455 | 0.69 | 0.909734 |
Target: 5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3' miRNA: 3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 86532 | 0.74 | 0.675632 |
Target: 5'- cGGCUGCagcuccAGCGUGuGGUUCGCGUg -3' miRNA: 3'- cCCGACGcac---UCGCACuUCAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 120008 | 0.73 | 0.706225 |
Target: 5'- cGGGCgg---GGGCGUGAAcUUCACGCu -3' miRNA: 3'- -CCCGacgcaCUCGCACUUcAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 138666 | 0.73 | 0.706225 |
Target: 5'- cGGGcCUGUGgggcgagGGGUGUG-GGUUCGCGUa -3' miRNA: 3'- -CCC-GACGCa------CUCGCACuUCAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 22920 | 0.73 | 0.726316 |
Target: 5'- cGGGg-GCG-GAGCGUGggG-UCGCGg -3' miRNA: 3'- -CCCgaCGCaCUCGCACuuCaAGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 23331 | 0.72 | 0.754839 |
Target: 5'- aGGGgUGCGcgGGGCucaccucgucgggGUGggGUUCGCGa -3' miRNA: 3'- -CCCgACGCa-CUCG-------------CACuuCAAGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 30213 | 0.72 | 0.774927 |
Target: 5'- aGGGggGUG-GGGgGUGggGggCGCGCg -3' miRNA: 3'- -CCCgaCGCaCUCgCACuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 30039 | 0.71 | 0.802605 |
Target: 5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3' miRNA: 3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 145807 | 0.71 | 0.828868 |
Target: 5'- cGGGCUcgGUGUGGGCGgcGggGUcggcggccCACGCc -3' miRNA: 3'- -CCCGA--CGCACUCGCa-CuuCAa-------GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 106774 | 0.7 | 0.837267 |
Target: 5'- gGGGCgGCGUcGGGCGgggcgcgcggGAGGgggccUCGCGCc -3' miRNA: 3'- -CCCGaCGCA-CUCGCa---------CUUCa----AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 36704 | 0.7 | 0.861295 |
Target: 5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3' miRNA: 3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 146757 | 0.7 | 0.866634 |
Target: 5'- cGGGCggacggucgGCGUGAGCGUcgucgaggcccaacGAGGgcCGCGa -3' miRNA: 3'- -CCCGa--------CGCACUCGCA--------------CUUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 119689 | 0.69 | 0.890354 |
Target: 5'- gGGGCUGCGgGAGC-UGg----CGCGCa -3' miRNA: 3'- -CCCGACGCaCUCGcACuucaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 155224 | 0.69 | 0.903511 |
Target: 5'- gGGGCgcgGCGcgGGGCG-GGccgUCGCGCa -3' miRNA: 3'- -CCCGa--CGCa-CUCGCaCUucaAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 38566 | 0.69 | 0.906029 |
Target: 5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3' miRNA: 3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 142471 | 0.69 | 0.909734 |
Target: 5'- uGGGCgaggGCGcccUGAcGCGgcuggcGgcGUUCACGCa -3' miRNA: 3'- -CCCGa---CGC---ACU-CGCa-----CuuCAAGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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