Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21602 | 5' | -53.4 | NC_004812.1 | + | 2047 | 0.67 | 0.941973 |
Target: 5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3' miRNA: 3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 113148 | 0.68 | 0.932201 |
Target: 5'- gGGGCU-CGUGGGgGcGguGUUUAUGCg -3' miRNA: 3'- -CCCGAcGCACUCgCaCuuCAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 36704 | 0.7 | 0.861295 |
Target: 5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3' miRNA: 3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 138666 | 0.73 | 0.706225 |
Target: 5'- cGGGcCUGUGgggcgagGGGUGUG-GGUUCGCGUa -3' miRNA: 3'- -CCC-GACGCa------CUCGCACuUCAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 18 | 0.67 | 0.961889 |
Target: 5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3' miRNA: 3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 156182 | 0.67 | 0.950781 |
Target: 5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3' miRNA: 3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 153221 | 0.68 | 0.92587 |
Target: 5'- cGGGCgGCGagucgccuaucacgaUGGGCGcGggGUUCccggcgggggccgggGCGCg -3' miRNA: 3'- -CCCGaCGC---------------ACUCGCaCuuCAAG---------------UGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 120008 | 0.73 | 0.706225 |
Target: 5'- cGGGCgg---GGGCGUGAAcUUCACGCu -3' miRNA: 3'- -CCCGacgcaCUCGCACUUcAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 38823 | 0.67 | 0.950781 |
Target: 5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3' miRNA: 3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 86532 | 0.74 | 0.675632 |
Target: 5'- cGGCUGCagcuccAGCGUGuGGUUCGCGUg -3' miRNA: 3'- cCCGACGcac---UCGCACuUCAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 122313 | 0.68 | 0.92695 |
Target: 5'- gGGGCgaacGCGUGGugcGCGUGggGgguggC-CGCc -3' miRNA: 3'- -CCCGa---CGCACU---CGCACuuCaa---GuGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 153633 | 0.67 | 0.946055 |
Target: 5'- cGGGCcggcccaUGCGggcGGGCGgGGAGagggCGCGCa -3' miRNA: 3'- -CCCG-------ACGCa--CUCGCaCUUCaa--GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 38566 | 0.69 | 0.906029 |
Target: 5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3' miRNA: 3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 146757 | 0.7 | 0.866634 |
Target: 5'- cGGGCggacggucgGCGUGAGCGUcgucgaggcccaacGAGGgcCGCGa -3' miRNA: 3'- -CCCGa--------CGCACUCGCA--------------CUUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 30039 | 0.71 | 0.802605 |
Target: 5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3' miRNA: 3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 22920 | 0.73 | 0.726316 |
Target: 5'- cGGGg-GCG-GAGCGUGggG-UCGCGg -3' miRNA: 3'- -CCCgaCGCaCUCGCACuuCaAGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 27228 | 0.67 | 0.962238 |
Target: 5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3' miRNA: 3'- cCCGACGCaCUCGcACuucaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 156428 | 0.67 | 0.961889 |
Target: 5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3' miRNA: 3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 146470 | 0.67 | 0.958648 |
Target: 5'- uGGGggGgGUGGGCGUaccGGgccUCACGCu -3' miRNA: 3'- -CCCgaCgCACUCGCAcu-UCa--AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 120886 | 0.67 | 0.954831 |
Target: 5'- gGGGCgggGCG-GAGaCGcGggGgUCGCGUc -3' miRNA: 3'- -CCCGa--CGCaCUC-GCaCuuCaAGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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