miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 35703 0.74 0.665349
Target:  5'- aGGGCUgGUGcGGGCGcGggGUcggCACGCg -3'
miRNA:   3'- -CCCGA-CGCaCUCGCaCuuCAa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 89047 0.66 0.974431
Target:  5'- aGGGCcgGCGUGgcGGCGgcgaGAGcugcugCACGCg -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCac--UUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 153340 0.67 0.954831
Target:  5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3'
miRNA:   3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 134091 0.66 0.965606
Target:  5'- gGGGCgccgacgucGCG-GuGCGUGAcgguGGUcCGCGCg -3'
miRNA:   3'- -CCCGa--------CGCaCuCGCACU----UCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 27228 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 156428 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 38823 0.67 0.950781
Target:  5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3'
miRNA:   3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 2047 0.67 0.941973
Target:  5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3'
miRNA:   3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 113148 0.68 0.932201
Target:  5'- gGGGCU-CGUGGGgGcGguGUUUAUGCg -3'
miRNA:   3'- -CCCGAcGCACUCgCaCuuCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 38566 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146757 0.7 0.866634
Target:  5'- cGGGCggacggucgGCGUGAGCGUcgucgaggcccaacGAGGgcCGCGa -3'
miRNA:   3'- -CCCGa--------CGCACUCGCA--------------CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 30039 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 22920 0.73 0.726316
Target:  5'- cGGGg-GCG-GAGCGUGggG-UCGCGg -3'
miRNA:   3'- -CCCgaCGCaCUCGCACuuCaAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 110760 0.66 0.972814
Target:  5'- gGGGCguuacgacgcGCGaUGGGgGUGggGgacacgguggaggcgUUCGCGCu -3'
miRNA:   3'- -CCCGa---------CGC-ACUCgCACuuC---------------AAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 100149 0.66 0.971696
Target:  5'- cGGGCgGCG-GGGCG-GGGcucaUCGCGCc -3'
miRNA:   3'- -CCCGaCGCaCUCGCaCUUca--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 87258 0.66 0.971696
Target:  5'- aGGGCUcGaCGaUGAGCugGUGGAGcagcugCGCGCc -3'
miRNA:   3'- -CCCGA-C-GC-ACUCG--CACUUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74925 0.69 0.909734
Target:  5'- aGGC-GCGcGAGCGggucgggGGAGccgUCGCGCg -3'
miRNA:   3'- cCCGaCGCaCUCGCa------CUUCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 13940 0.69 0.909734
Target:  5'- cGGuCUGCGUGGGCG---AGccCACGCa -3'
miRNA:   3'- cCC-GACGCACUCGCacuUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155548 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 122554 0.69 0.909734
Target:  5'- gGGGC-GCGgggggGGGCG-GAGGggaGCGCg -3'
miRNA:   3'- -CCCGaCGCa----CUCGCaCUUCaagUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.