miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 81917 0.66 0.971696
Target:  5'- aGGGCgaacGCGaucGAGCGgggGAGGUagGCGg -3'
miRNA:   3'- -CCCGa---CGCa--CUCGCa--CUUCAagUGCg -5'
21602 5' -53.4 NC_004812.1 + 7665 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74925 0.69 0.909734
Target:  5'- aGGC-GCGcGAGCGggucgggGGAGccgUCGCGCg -3'
miRNA:   3'- cCCGaCGCaCUCGCa------CUUCa--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 13940 0.69 0.909734
Target:  5'- cGGuCUGCGUGGGCG---AGccCACGCa -3'
miRNA:   3'- cCC-GACGCACUCGCacuUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 54933 0.67 0.962238
Target:  5'- cGGGCaGuCG-GAGUcguacGUGAGGUaCACGCc -3'
miRNA:   3'- -CCCGaC-GCaCUCG-----CACUUCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 125527 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 103149 0.67 0.962238
Target:  5'- cGGGCccgcUGCGUcugGAGCGcGggGgccgccgUCAgCGCg -3'
miRNA:   3'- -CCCG----ACGCA---CUCGCaCuuCa------AGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 26692 0.72 0.784296
Target:  5'- gGGGCUGCGUaGGCGgcgacgGAuc--CACGCa -3'
miRNA:   3'- -CCCGACGCAcUCGCa-----CUucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 64168 0.66 0.968757
Target:  5'- cGGGCUccgcGCGggaGGGCGgcgGggGccggCACGUg -3'
miRNA:   3'- -CCCGA----CGCa--CUCGCa--CuuCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74357 0.66 0.971696
Target:  5'- gGGGCgcggGCGcGGGCGgcGggGUcccgccCGCGCc -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa-CuuCAa-----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 12233 0.69 0.903511
Target:  5'- uGGcGCUcGCGcaGGGgGuUGAGGUUCAUGCg -3'
miRNA:   3'- -CC-CGA-CGCa-CUCgC-ACUUCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 87258 0.66 0.971696
Target:  5'- aGGGCUcGaCGaUGAGCugGUGGAGcagcugCGCGCc -3'
miRNA:   3'- -CCCGA-C-GC-ACUCG--CACUUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 100149 0.66 0.971696
Target:  5'- cGGGCgGCG-GGGCG-GGGcucaUCGCGCc -3'
miRNA:   3'- -CCCGaCGCaCUCGCaCUUca--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 110760 0.66 0.972814
Target:  5'- gGGGCguuacgacgcGCGaUGGGgGUGggGgacacgguggaggcgUUCGCGCu -3'
miRNA:   3'- -CCCGa---------CGC-ACUCgCACuuC---------------AAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 30112 0.66 0.965606
Target:  5'- gGGGCUGCG-GGGCGcacg--UCcCGCa -3'
miRNA:   3'- -CCCGACGCaCUCGCacuucaAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 144418 0.66 0.974431
Target:  5'- cGGC-GCGacGGCGgcucgGAAGUUCcCGCg -3'
miRNA:   3'- cCCGaCGCacUCGCa----CUUCAAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 146354 0.66 0.975977
Target:  5'- cGGCUGCGUcgcGGCGUucguccucgUCGCGCu -3'
miRNA:   3'- cCCGACGCAc--UCGCAcuuca----AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 152736 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155548 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 73639 0.72 0.784296
Target:  5'- -cGCcGCGggGAGCGUGAGGUgCAUGUa -3'
miRNA:   3'- ccCGaCGCa-CUCGCACUUCAaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.