Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21602 | 5' | -53.4 | NC_004812.1 | + | 147896 | 0.67 | 0.941973 |
Target: 5'- gGGGCUcGCGagggGGGCGcgGAGGgcgUCcCGCc -3' miRNA: 3'- -CCCGA-CGCa---CUCGCa-CUUCa--AGuGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 94321 | 0.67 | 0.962238 |
Target: 5'- cGGCUGCGcggcggUGAccGCGUG-GGUcuccgCGCGCg -3' miRNA: 3'- cCCGACGC------ACU--CGCACuUCAa----GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 103149 | 0.67 | 0.962238 |
Target: 5'- cGGGCccgcUGCGUcugGAGCGcGggGgccgccgUCAgCGCg -3' miRNA: 3'- -CCCG----ACGCA---CUCGCaCuuCa------AGU-GCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 152736 | 0.67 | 0.962238 |
Target: 5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3' miRNA: 3'- cCCGACGCaCUCGcACuucaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 30112 | 0.66 | 0.965606 |
Target: 5'- gGGGCUGCG-GGGCGcacg--UCcCGCa -3' miRNA: 3'- -CCCGACGCaCUCGCacuucaAGuGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 27807 | 0.66 | 0.968757 |
Target: 5'- gGGGCcgGgGgggGAGCG-GggGUUCgACGg -3' miRNA: 3'- -CCCGa-CgCa--CUCGCaCuuCAAG-UGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 64168 | 0.66 | 0.968757 |
Target: 5'- cGGGCUccgcGCGggaGGGCGgcgGggGccggCACGUg -3' miRNA: 3'- -CCCGA----CGCa--CUCGCa--CuuCaa--GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 74357 | 0.66 | 0.971696 |
Target: 5'- gGGGCgcggGCGcGGGCGgcGggGUcccgccCGCGCc -3' miRNA: 3'- -CCCGa---CGCaCUCGCa-CuuCAa-----GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 81917 | 0.66 | 0.971696 |
Target: 5'- aGGGCgaacGCGaucGAGCGgggGAGGUagGCGg -3' miRNA: 3'- -CCCGa---CGCa--CUCGCa--CUUCAagUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 54933 | 0.67 | 0.962238 |
Target: 5'- cGGGCaGuCG-GAGUcguacGUGAGGUaCACGCc -3' miRNA: 3'- -CCCGaC-GCaCUCG-----CACUUCAaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 125527 | 0.67 | 0.961889 |
Target: 5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3' miRNA: 3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 100897 | 0.67 | 0.958648 |
Target: 5'- cGGGgUGCGccGAGCGc-GGGUgcaggCGCGCg -3' miRNA: 3'- -CCCgACGCa-CUCGCacUUCAa----GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 127556 | 0.67 | 0.941973 |
Target: 5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3' miRNA: 3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 7922 | 0.67 | 0.950781 |
Target: 5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3' miRNA: 3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 125281 | 0.67 | 0.950781 |
Target: 5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3' miRNA: 3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 83065 | 0.67 | 0.954831 |
Target: 5'- aGGGCUcGCGUcAGCGgggUGAGcgUCGCGUc -3' miRNA: 3'- -CCCGA-CGCAcUCGC---ACUUcaAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 60921 | 0.67 | 0.954831 |
Target: 5'- cGGGCUgaagugggacgGCGUGAGCuUGAGGgagACGg -3' miRNA: 3'- -CCCGA-----------CGCACUCGcACUUCaagUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 109021 | 0.67 | 0.954831 |
Target: 5'- cGGCUGCcUGcGCGUGucggaucgcGAGUucaUCACGUa -3' miRNA: 3'- cCCGACGcACuCGCAC---------UUCA---AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 122439 | 0.67 | 0.954831 |
Target: 5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3' miRNA: 3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 43767 | 0.67 | 0.958648 |
Target: 5'- -aGC-GCGUGAGCGccGAGgcCACGCc -3' miRNA: 3'- ccCGaCGCACUCGCacUUCaaGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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