miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 64168 0.66 0.968757
Target:  5'- cGGGCUccgcGCGggaGGGCGgcgGggGccggCACGUg -3'
miRNA:   3'- -CCCGA----CGCa--CUCGCa--CuuCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 27807 0.66 0.968757
Target:  5'- gGGGCcgGgGgggGAGCG-GggGUUCgACGg -3'
miRNA:   3'- -CCCGa-CgCa--CUCGCaCuuCAAG-UGCg -5'
21602 5' -53.4 NC_004812.1 + 94688 0.66 0.968757
Target:  5'- cGGgUGCGUGGGUGgggcGAGGUcUugGUu -3'
miRNA:   3'- cCCgACGCACUCGCa---CUUCAaGugCG- -5'
21602 5' -53.4 NC_004812.1 + 100865 0.66 0.968757
Target:  5'- gGGGCcGCGgggGAgGCGggGGAGggCGcCGCg -3'
miRNA:   3'- -CCCGaCGCa--CU-CGCa-CUUCaaGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 134091 0.66 0.965606
Target:  5'- gGGGCgccgacgucGCG-GuGCGUGAcgguGGUcCGCGCg -3'
miRNA:   3'- -CCCGa--------CGCaCuCGCACU----UCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 46008 0.66 0.965606
Target:  5'- cGGGCgggGCGUGGaaGUGAaaccgccgcgGGUcCGCGUg -3'
miRNA:   3'- -CCCGa--CGCACUcgCACU----------UCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 30112 0.66 0.965606
Target:  5'- gGGGCUGCG-GGGCGcacg--UCcCGCa -3'
miRNA:   3'- -CCCGACGCaCUCGCacuucaAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 84638 0.66 0.964619
Target:  5'- gGGGC-GCGUGAGCcucccgcggCGCGCg -3'
miRNA:   3'- -CCCGaCGCACUCGcacuucaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 54933 0.67 0.962238
Target:  5'- cGGGCaGuCG-GAGUcguacGUGAGGUaCACGCc -3'
miRNA:   3'- -CCCGaC-GCaCUCG-----CACUUCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 152736 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 94121 0.67 0.962238
Target:  5'- cGGGC-GCGUGGuccGCGccggcccaGAGGcgCGCGCg -3'
miRNA:   3'- -CCCGaCGCACU---CGCa-------CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 81792 0.67 0.962238
Target:  5'- uGGGaCgagGUGUGGGCGc--GGUUCGgGCg -3'
miRNA:   3'- -CCC-Ga--CGCACUCGCacuUCAAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 103149 0.67 0.962238
Target:  5'- cGGGCccgcUGCGUcugGAGCGcGggGgccgccgUCAgCGCg -3'
miRNA:   3'- -CCCG----ACGCA---CUCGCaCuuCa------AGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 94321 0.67 0.962238
Target:  5'- cGGCUGCGcggcggUGAccGCGUG-GGUcuccgCGCGCg -3'
miRNA:   3'- cCCGACGC------ACU--CGCACuUCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 27228 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 88234 0.67 0.962238
Target:  5'- uGGGCgGCGgGGGCGUuu-GacCGCGCg -3'
miRNA:   3'- -CCCGaCGCaCUCGCAcuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 125527 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 18 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 156428 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 100897 0.67 0.958648
Target:  5'- cGGGgUGCGccGAGCGc-GGGUgcaggCGCGCg -3'
miRNA:   3'- -CCCgACGCa-CUCGCacUUCAa----GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.