miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21604 3' -54.5 NC_004812.1 + 54639 0.66 0.957284
Target:  5'- gCGCGGGCgGCg--GGCGUCcgCgGCCc -3'
miRNA:   3'- -GCGUUUGaCGaggCCGCAGuaGaCGG- -5'
21604 3' -54.5 NC_004812.1 + 88309 0.66 0.957284
Target:  5'- gGCGAGCUGCUggUGGCGU-GUCacgugauuggcgUGCCg -3'
miRNA:   3'- gCGUUUGACGAg-GCCGCAgUAG------------ACGG- -5'
21604 3' -54.5 NC_004812.1 + 130152 0.66 0.957284
Target:  5'- gCGCGGGC-GCgCCGGCGgccUCGUagcGCCg -3'
miRNA:   3'- -GCGUUUGaCGaGGCCGC---AGUAga-CGG- -5'
21604 3' -54.5 NC_004812.1 + 4644 0.66 0.957284
Target:  5'- gCGCGGGC-GCgCCGGCGgccUCGUagcGCCg -3'
miRNA:   3'- -GCGUUUGaCGaGGCCGC---AGUAga-CGG- -5'
21604 3' -54.5 NC_004812.1 + 136646 0.66 0.956525
Target:  5'- uCGCcucgacgGAGCUGCaggccuuuuacggUCCGGCGgaaaUAUCgGCCg -3'
miRNA:   3'- -GCG-------UUUGACG-------------AGGCCGCa---GUAGaCGG- -5'
21604 3' -54.5 NC_004812.1 + 81919 0.66 0.953794
Target:  5'- gGCGGACgcgcacuacccgcgGCUCCcggccaaguaccagGGCGcCAUCgggGCCa -3'
miRNA:   3'- gCGUUUGa-------------CGAGG--------------CCGCaGUAGa--CGG- -5'
21604 3' -54.5 NC_004812.1 + 110808 0.66 0.953394
Target:  5'- gCGCuaGAGCUGCUggGGCG-CAUCcucGCCu -3'
miRNA:   3'- -GCG--UUUGACGAggCCGCaGUAGa--CGG- -5'
21604 3' -54.5 NC_004812.1 + 63588 0.66 0.953394
Target:  5'- cCGgGGugUGUUCCGcGUGUgggaCAUCgGCCa -3'
miRNA:   3'- -GCgUUugACGAGGC-CGCA----GUAGaCGG- -5'
21604 3' -54.5 NC_004812.1 + 14648 0.66 0.953394
Target:  5'- aGCAGGgUGCUCgugaaCGGCGcCuUCggGCCg -3'
miRNA:   3'- gCGUUUgACGAG-----GCCGCaGuAGa-CGG- -5'
21604 3' -54.5 NC_004812.1 + 93103 0.66 0.953394
Target:  5'- aGCGGGC-GCUUcgcggugucgggCGGCGgCGUCUGCg -3'
miRNA:   3'- gCGUUUGaCGAG------------GCCGCaGUAGACGg -5'
21604 3' -54.5 NC_004812.1 + 134056 0.66 0.953394
Target:  5'- gGCAGGCcGaCgggCCGGUGUCGUUUcCCg -3'
miRNA:   3'- gCGUUUGaC-Ga--GGCCGCAGUAGAcGG- -5'
21604 3' -54.5 NC_004812.1 + 121165 0.66 0.953394
Target:  5'- uGCAGcGCUGCgagggCCGG-GUgGuguuUCUGCCg -3'
miRNA:   3'- gCGUU-UGACGa----GGCCgCAgU----AGACGG- -5'
21604 3' -54.5 NC_004812.1 + 124760 0.66 0.953394
Target:  5'- gGCuGGCUGUggagCCGGCGcUCgGUCUcGCUg -3'
miRNA:   3'- gCGuUUGACGa---GGCCGC-AG-UAGA-CGG- -5'
21604 3' -54.5 NC_004812.1 + 71603 0.66 0.952993
Target:  5'- gCGCGuacAGCcGCUCuCGGCGcgacaggaccccaUCGUCgagGCCu -3'
miRNA:   3'- -GCGU---UUGaCGAG-GCCGC-------------AGUAGa--CGG- -5'
21604 3' -54.5 NC_004812.1 + 150193 0.66 0.949695
Target:  5'- gGCGGGCUGUacggcgcgccguaccCCGGCGUCGccCUGaCCc -3'
miRNA:   3'- gCGUUUGACGa--------------GGCCGCAGUa-GAC-GG- -5'
21604 3' -54.5 NC_004812.1 + 119292 0.66 0.949695
Target:  5'- gGCGGGCUGUacggcgcgccguaccCCGGCGUCGccCUGaCCc -3'
miRNA:   3'- gCGUUUGACGa--------------GGCCGCAGUa-GAC-GG- -5'
21604 3' -54.5 NC_004812.1 + 152432 0.66 0.949272
Target:  5'- cCGCcggguACgGCgccgCgGGCGUCAUC-GCCg -3'
miRNA:   3'- -GCGuu---UGaCGa---GgCCGCAGUAGaCGG- -5'
21604 3' -54.5 NC_004812.1 + 89873 0.66 0.949272
Target:  5'- gGCGcGCUGCUCCGaCGgcacucCAUCUcGCUc -3'
miRNA:   3'- gCGUuUGACGAGGCcGCa-----GUAGA-CGG- -5'
21604 3' -54.5 NC_004812.1 + 10267 0.66 0.949272
Target:  5'- cCGCGAcGCaGCcgaCGGCGcgCGUUUGCCg -3'
miRNA:   3'- -GCGUU-UGaCGag-GCCGCa-GUAGACGG- -5'
21604 3' -54.5 NC_004812.1 + 23398 0.66 0.94842
Target:  5'- gGCGAGCguccggcgacggGCgUCCGGCGgCGUCgGCg -3'
miRNA:   3'- gCGUUUGa-----------CG-AGGCCGCaGUAGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.