miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21604 5' -62 NC_004812.1 + 2948 0.65 0.705384
Target:  5'- cUCGGCGGGcgcaccgUGCgcgcccucuccccGCCCGcccgcaUGGGCG-GCCc -3'
miRNA:   3'- -GGUCGCCU-------ACG-------------CGGGC------ACCCGCuCGG- -5'
21604 5' -62 NC_004812.1 + 32162 0.65 0.705384
Target:  5'- gCGGCGGG-GCGCCCccgcgcggaccGGGUgccuccGGGCCa -3'
miRNA:   3'- gGUCGCCUaCGCGGGca---------CCCG------CUCGG- -5'
21604 5' -62 NC_004812.1 + 30000 0.66 0.700618
Target:  5'- gCCGGCGGucgcguagaagacGUGCGCCagguacccaggagggCGggagGGGCGGGg- -3'
miRNA:   3'- -GGUCGCC-------------UACGCGG---------------GCa---CCCGCUCgg -5'
21604 5' -62 NC_004812.1 + 155509 0.66 0.700618
Target:  5'- gCCGGCGGucgcguagaagacGUGCGCCagguacccaggagggCGggagGGGCGGGg- -3'
miRNA:   3'- -GGUCGCC-------------UACGCGG---------------GCa---CCCGCUCgg -5'
21604 5' -62 NC_004812.1 + 20796 0.66 0.697751
Target:  5'- aCCuGCGGc-GCGCCCGcgucGGCGcccGCCu -3'
miRNA:   3'- -GGuCGCCuaCGCGGGCac--CCGCu--CGG- -5'
21604 5' -62 NC_004812.1 + 80230 0.66 0.697751
Target:  5'- gCCAucGCGcGccucgGCGCCCuggGGGCGgcGGCCg -3'
miRNA:   3'- -GGU--CGC-Cua---CGCGGGca-CCCGC--UCGG- -5'
21604 5' -62 NC_004812.1 + 110174 0.66 0.697751
Target:  5'- cCCAGCGccaGCGCCCa-GGG-GAGCg -3'
miRNA:   3'- -GGUCGCcuaCGCGGGcaCCCgCUCGg -5'
21604 5' -62 NC_004812.1 + 115799 0.66 0.697751
Target:  5'- gCAGCGaGcgGCaGCCguUGUGaGGCGAGgCg -3'
miRNA:   3'- gGUCGC-CuaCG-CGG--GCAC-CCGCUCgG- -5'
21604 5' -62 NC_004812.1 + 76051 0.66 0.697751
Target:  5'- gUCGGCGGcccaGCGCUCGcggccGGcGCGGGCg -3'
miRNA:   3'- -GGUCGCCua--CGCGGGCa----CC-CGCUCGg -5'
21604 5' -62 NC_004812.1 + 106783 0.66 0.697751
Target:  5'- uCgGGCGGG-GCGCgCG-GGaGgGGGCCu -3'
miRNA:   3'- -GgUCGCCUaCGCGgGCaCC-CgCUCGG- -5'
21604 5' -62 NC_004812.1 + 124235 0.66 0.697751
Target:  5'- cCUGGCGGcgG-GCCUGgcgggGGGCGcGCg -3'
miRNA:   3'- -GGUCGCCuaCgCGGGCa----CCCGCuCGg -5'
21604 5' -62 NC_004812.1 + 152035 0.66 0.697751
Target:  5'- gUCGGCGGGcccggGgGUCCaaggGUGGcGCGAGUCc -3'
miRNA:   3'- -GGUCGCCUa----CgCGGG----CACC-CGCUCGG- -5'
21604 5' -62 NC_004812.1 + 155687 0.66 0.697751
Target:  5'- gCCGGCGGGcucgGCGCgcgcgagggCGUGGGgGAGg- -3'
miRNA:   3'- -GGUCGCCUa---CGCGg--------GCACCCgCUCgg -5'
21604 5' -62 NC_004812.1 + 98630 0.66 0.697751
Target:  5'- gCCGucGCGGccgcgcUGCGCCCG-GGcGCGAcGCg -3'
miRNA:   3'- -GGU--CGCCu-----ACGCGGGCaCC-CGCU-CGg -5'
21604 5' -62 NC_004812.1 + 58397 0.66 0.697751
Target:  5'- aCCAgGCGGccGcCGCCUGgaggcUGGGgGGGCg -3'
miRNA:   3'- -GGU-CGCCuaC-GCGGGC-----ACCCgCUCGg -5'
21604 5' -62 NC_004812.1 + 99954 0.66 0.697751
Target:  5'- gCCcGCGuc-GUGCCgGUGGGcCGuGCCg -3'
miRNA:   3'- -GGuCGCcuaCGCGGgCACCC-GCuCGG- -5'
21604 5' -62 NC_004812.1 + 107196 0.66 0.697751
Target:  5'- gCGGCGGcccgGgGCCac-GGcGCGGGCCg -3'
miRNA:   3'- gGUCGCCua--CgCGGgcaCC-CGCUCGG- -5'
21604 5' -62 NC_004812.1 + 88178 0.66 0.697751
Target:  5'- aCCc-CGGG-GCGUcccuccucucggCCGcgGGGCGAGCCg -3'
miRNA:   3'- -GGucGCCUaCGCG------------GGCa-CCCGCUCGG- -5'
21604 5' -62 NC_004812.1 + 115483 0.66 0.697751
Target:  5'- gCguGCGGccGCGCCgG-GcGGCG-GCCc -3'
miRNA:   3'- -GguCGCCuaCGCGGgCaC-CCGCuCGG- -5'
21604 5' -62 NC_004812.1 + 121134 0.66 0.697751
Target:  5'- gUCGGCGGGcccggGgGUCCaaggGUGGcGCGAGUCc -3'
miRNA:   3'- -GGUCGCCUa----CgCGGG----CACC-CGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.