miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21604 5' -62 NC_004812.1 + 38317 1.13 0.000517
Target:  5'- cCCAGCGGAUGCGCCCGUGGGCGAGCCg -3'
miRNA:   3'- -GGUCGCCUACGCGGGCACCCGCUCGG- -5'
21604 5' -62 NC_004812.1 + 41560 0.83 0.069996
Target:  5'- gCCGGCGcGGgcugagcgacgUGCaGCCCGUGGGCGAGCa -3'
miRNA:   3'- -GGUCGC-CU-----------ACG-CGGGCACCCGCUCGg -5'
21604 5' -62 NC_004812.1 + 67210 0.82 0.074407
Target:  5'- gCGGCGGcgGCGCCCGcGGGCucccuccucucgaggGAGCCg -3'
miRNA:   3'- gGUCGCCuaCGCGGGCaCCCG---------------CUCGG- -5'
21604 5' -62 NC_004812.1 + 129230 0.8 0.110233
Target:  5'- gCCGGCGGA-GCGCaCC-UGGcGCGGGCCg -3'
miRNA:   3'- -GGUCGCCUaCGCG-GGcACC-CGCUCGG- -5'
21604 5' -62 NC_004812.1 + 3722 0.8 0.110233
Target:  5'- gCCGGCGGA-GCGCaCC-UGGcGCGGGCCg -3'
miRNA:   3'- -GGUCGCCUaCGCG-GGcACC-CGCUCGG- -5'
21604 5' -62 NC_004812.1 + 127992 0.79 0.1248
Target:  5'- gCCGGCGGcgGCgGCCuCGcGGGCGGGCg -3'
miRNA:   3'- -GGUCGCCuaCG-CGG-GCaCCCGCUCGg -5'
21604 5' -62 NC_004812.1 + 2484 0.79 0.1248
Target:  5'- gCCGGCGGcgGCgGCCuCGcGGGCGGGCg -3'
miRNA:   3'- -GGUCGCCuaCG-CGG-GCaCCCGCUCGg -5'
21604 5' -62 NC_004812.1 + 102903 0.79 0.12792
Target:  5'- gCGGCGGAccgGCGCCuCGgggGGGCG-GCCg -3'
miRNA:   3'- gGUCGCCUa--CGCGG-GCa--CCCGCuCGG- -5'
21604 5' -62 NC_004812.1 + 144953 0.79 0.131112
Target:  5'- gCCGGCGGAcGC-CCCGUGcgcGGCGAGCg -3'
miRNA:   3'- -GGUCGCCUaCGcGGGCAC---CCGCUCGg -5'
21604 5' -62 NC_004812.1 + 38847 0.78 0.137719
Target:  5'- gCCGGgGGgcGCGUCCG-GGGgGGGCCg -3'
miRNA:   3'- -GGUCgCCuaCGCGGGCaCCCgCUCGG- -5'
21604 5' -62 NC_004812.1 + 7946 0.78 0.137719
Target:  5'- gCCGGgGGgcGCGUCCG-GGGgGGGCCg -3'
miRNA:   3'- -GGUCgCCuaCGCGGGCaCCCgCUCGG- -5'
21604 5' -62 NC_004812.1 + 108245 0.78 0.144629
Target:  5'- cCCGGCGGcgGCGUCCGc-GGCgGAGCCc -3'
miRNA:   3'- -GGUCGCCuaCGCGGGCacCCG-CUCGG- -5'
21604 5' -62 NC_004812.1 + 74372 0.78 0.155589
Target:  5'- gCGGCGGGgucccgcccGCGCCCGUuugGGcGCGGGCCu -3'
miRNA:   3'- gGUCGCCUa--------CGCGGGCA---CC-CGCUCGG- -5'
21604 5' -62 NC_004812.1 + 79437 0.77 0.159407
Target:  5'- gCGGCGGGgacgGCGCcgCCGcGGGCGGGCUg -3'
miRNA:   3'- gGUCGCCUa---CGCG--GGCaCCCGCUCGG- -5'
21604 5' -62 NC_004812.1 + 60078 0.77 0.163308
Target:  5'- -gGGCGGA-GCGCaCGcGGGCGAGCCc -3'
miRNA:   3'- ggUCGCCUaCGCGgGCaCCCGCUCGG- -5'
21604 5' -62 NC_004812.1 + 44158 0.77 0.167296
Target:  5'- aCGGcCGGAggGCGCUCGgGGGCcGAGCCg -3'
miRNA:   3'- gGUC-GCCUa-CGCGGGCaCCCG-CUCGG- -5'
21604 5' -62 NC_004812.1 + 27888 0.77 0.17137
Target:  5'- -gGGUcGGUGgGCCCG-GGGCGAGCCc -3'
miRNA:   3'- ggUCGcCUACgCGGGCaCCCGCUCGG- -5'
21604 5' -62 NC_004812.1 + 109688 0.77 0.175533
Target:  5'- gCGGCGGAUGUGUCCGccGcGGCGgcGGCCg -3'
miRNA:   3'- gGUCGCCUACGCGGGCa-C-CCGC--UCGG- -5'
21604 5' -62 NC_004812.1 + 95530 0.77 0.179786
Target:  5'- cCCGGCGGG-GCgGCCCG-GGGCGucgcGCCc -3'
miRNA:   3'- -GGUCGCCUaCG-CGGGCaCCCGCu---CGG- -5'
21604 5' -62 NC_004812.1 + 83361 0.76 0.18413
Target:  5'- gCUGGCGGcc-CGCCUGgGGGCGGGCCg -3'
miRNA:   3'- -GGUCGCCuacGCGGGCaCCCGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.