miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 3' -56.9 NC_004812.1 + 18440 0.66 0.840949
Target:  5'- ---cGggGGCCGCguccgguggCGCGGCGggGg-- -3'
miRNA:   3'- uuuuCaaCCGGCG---------GCGCCGCuuCgau -5'
21606 3' -56.9 NC_004812.1 + 149657 0.66 0.840949
Target:  5'- gAAGGGggGGCgCGaaaCGgGGCGggGUUGu -3'
miRNA:   3'- -UUUUCaaCCG-GCg--GCgCCGCuuCGAU- -5'
21606 3' -56.9 NC_004812.1 + 141358 0.66 0.840949
Target:  5'- gAGAAGcccaccgGGCCGCCGgGuccgcccugcGCGAAGCa- -3'
miRNA:   3'- -UUUUCaa-----CCGGCGGCgC----------CGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 70401 0.66 0.840949
Target:  5'- cGGAGGUc-GCUGCCGCGGaggaaCGGAGCg- -3'
miRNA:   3'- -UUUUCAacCGGCGGCGCC-----GCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 86880 0.66 0.840949
Target:  5'- --cGGUgccGGaCCGCCGCcuuuuaucgGGCGAGGCc- -3'
miRNA:   3'- uuuUCAa--CC-GGCGGCG---------CCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 154011 0.66 0.840949
Target:  5'- gGAGAGUccgGuGCCGUCgGCGGCGGcGGCg- -3'
miRNA:   3'- -UUUUCAa--C-CGGCGG-CGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 140174 0.66 0.840949
Target:  5'- uAAAAGaUGGCCGUcuCGCGGCccuGGUUGu -3'
miRNA:   3'- -UUUUCaACCGGCG--GCGCCGcu-UCGAU- -5'
21606 3' -56.9 NC_004812.1 + 80466 0.66 0.840949
Target:  5'- cAAGG-UGGUCGCggcgaCGCGGCGgcGCg- -3'
miRNA:   3'- uUUUCaACCGGCG-----GCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 24148 0.66 0.840949
Target:  5'- gAAGGGggGGCgCGaaaCGgGGCGggGUUGu -3'
miRNA:   3'- -UUUUCaaCCG-GCg--GCgCCGCuuCGAU- -5'
21606 3' -56.9 NC_004812.1 + 60867 0.66 0.840949
Target:  5'- ------cGGCCGCCGCGaGCGccagaucugcAGGCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCGC-CGC----------UUCGau -5'
21606 3' -56.9 NC_004812.1 + 2470 0.66 0.840949
Target:  5'- cGGAAGUccgGGgCGCCgGCGGCGGcGGCc- -3'
miRNA:   3'- -UUUUCAa--CCgGCGG-CGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 43330 0.66 0.832579
Target:  5'- gAAGGGcUGGUgcaucgccacggCGCUGCgGGCGAAGCUc -3'
miRNA:   3'- -UUUUCaACCG------------GCGGCG-CCGCUUCGAu -5'
21606 3' -56.9 NC_004812.1 + 50452 0.66 0.832579
Target:  5'- ------aGGCCGCCGaGGCcGAGCUc -3'
miRNA:   3'- uuuucaaCCGGCGGCgCCGcUUCGAu -5'
21606 3' -56.9 NC_004812.1 + 103955 0.66 0.832579
Target:  5'- --uAGagGGCCGCCGgGGgGAccggaacggggGGCUGc -3'
miRNA:   3'- uuuUCaaCCGGCGGCgCCgCU-----------UCGAU- -5'
21606 3' -56.9 NC_004812.1 + 149140 0.66 0.832579
Target:  5'- ------cGGCCGCCGgGGCGc-GCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCgCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 137720 0.66 0.832579
Target:  5'- -cGAGccGGCCuCCGCGGCGAcccGCg- -3'
miRNA:   3'- uuUUCaaCCGGcGGCGCCGCUu--CGau -5'
21606 3' -56.9 NC_004812.1 + 17947 0.66 0.832579
Target:  5'- gGAGAGggGGUCGCC-CGGgCGAcGGCg- -3'
miRNA:   3'- -UUUUCaaCCGGCGGcGCC-GCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 147245 0.66 0.832579
Target:  5'- cGAAGUucaUGGCCGCCGUGcGCcacGGCc- -3'
miRNA:   3'- uUUUCA---ACCGGCGGCGC-CGcu-UCGau -5'
21606 3' -56.9 NC_004812.1 + 68449 0.66 0.832579
Target:  5'- cGAAGGggcucccggUGGUgGCCGCGGCGc-GCa- -3'
miRNA:   3'- -UUUUCa--------ACCGgCGGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 80052 0.66 0.832579
Target:  5'- --cGGggGGUCGCUGcCGGCcGAGGCc- -3'
miRNA:   3'- uuuUCaaCCGGCGGC-GCCG-CUUCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.