miRNA display CGI

Results 41 - 60 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	30594	0.66	0.595413
	Target:  5'- aGCG-CCCGCcgggGGUcggGCGGCGGgaCCGCCa -3' miRNA:   3'- gCGCuGGGUG----UCG---CGCUGCC--GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	46676	0.66	0.585863
	Target:  5'- gGCaGCuCCGCuccgauaugaGGCGCGACGG-CGCUCu -3' miRNA:   3'- gCGcUG-GGUG----------UCGCGCUGCCgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	137073	0.66	0.585863
	Target:  5'- uCGCGAUCCACcGCGCccuGAC-GCCggGCUCg -3' miRNA:   3'- -GCGCUGGGUGuCGCG---CUGcCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	75264	0.66	0.604988
	Target:  5'- gCGCGGa-C-CAGCGCGuccuUGGCCucGCCCa -3' miRNA:   3'- -GCGCUggGuGUCGCGCu---GCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	130644	0.66	0.585863
	Target:  5'- gGCcGCCCggggACGGCgGCGuCGGCCcgcgguccggGCCCg -3' miRNA:   3'- gCGcUGGG----UGUCG-CGCuGCCGG----------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	55487	0.66	0.604988
	Target:  5'- cCGCGAagccguucgaCACGGcCGCGAaGGUCGCCg -3' miRNA:   3'- -GCGCUgg--------GUGUC-GCGCUgCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	61927	0.66	0.594457
	Target:  5'- uCGCcccACCCACGcaccCGCGucgauaaaaaccaACGGCCGCCg -3' miRNA:   3'- -GCGc--UGGGUGUc---GCGC-------------UGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	86892	0.66	0.608823
	Target:  5'- gCGCGACCC-CAGCcuGCugcugaacuacuucuGuCGGUgCGCCCg -3' miRNA:   3'- -GCGCUGGGuGUCG--CG---------------CuGCCG-GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	150554	0.66	0.611701
	Target:  5'- cCGCG-CCUGCGcggugucgauagccGCGCGGCGGCgGgCUCc -3' miRNA:   3'- -GCGCuGGGUGU--------------CGCGCUGCCGgC-GGG- -5'
21606	5'	-63.5	NC_004812.1	+	383	0.66	0.595413
	Target:  5'- gGCGcauCCCGCGGCGCc----CCGCCCc -3' miRNA:   3'- gCGCu--GGGUGUCGCGcugccGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	126437	0.66	0.585863
	Target:  5'- gCGCGccgaGCCCGCcGCGCGcuccCGGCUguggagGCCUa -3' miRNA:   3'- -GCGC----UGGGUGuCGCGCu---GCCGG------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5032	0.66	0.604988
	Target:  5'- gGCGGCaggcgggGCAGCGCcGCGGUCacggggGCCCg -3' miRNA:   3'- gCGCUGgg-----UGUCGCGcUGCCGG------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	79839	0.66	0.595413
	Target:  5'- cCGCGcGCCUAUGGUGaccaGgguguacgacaGCGGCCGCCg -3' miRNA:   3'- -GCGC-UGGGUGUCGCg---C-----------UGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	142259	0.66	0.595413
	Target:  5'- gCGCGGCCgGCaAGCaCGuGCGGCU-CCCg -3' miRNA:   3'- -GCGCUGGgUG-UCGcGC-UGCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	43959	0.66	0.613621
	Target:  5'- gGCGuCCCGCAggucgguGUGCGugGccaCCGCCa -3' miRNA:   3'- gCGCuGGGUGU-------CGCGCugCc--GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	19984	0.66	0.585863
	Target:  5'- gGCGAUCgACAccucggcaaagcGCGCGGCG-CCGUCUc -3' miRNA:   3'- gCGCUGGgUGU------------CGCGCUGCcGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	81019	0.66	0.604988
	Target:  5'- cCGCGACC---AGCGCG-CGGUCcgacugaaGCCCc -3' miRNA:   3'- -GCGCUGGgugUCGCGCuGCCGG--------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	83289	0.66	0.592546
	Target:  5'- aCGCgGAUCCA-GGCGCaggcagcucucggaGACGGaCCGCCa -3' miRNA:   3'- -GCG-CUGGGUgUCGCG--------------CUGCC-GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	54391	0.66	0.595413
	Target:  5'- gGCG-CCCGCgGGCaCGGCcggGGCUGCUCa -3' miRNA:   3'- gCGCuGGGUG-UCGcGCUG---CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	44868	0.66	0.604988
	Target:  5'- gCGCGcGCgCACgAGCGCGGCG-UCGCaCCc -3' miRNA:   3'- -GCGC-UGgGUG-UCGCGCUGCcGGCG-GG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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