miRNA display CGI


Results 61 - 80 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 44868 0.66 0.604988
Target:  5'- gCGCGcGCgCACgAGCGCGGCG-UCGCaCCc -3'
miRNA:   3'- -GCGC-UGgGUG-UCGCGCUGCcGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 91526 0.66 0.585863
Target:  5'- cCGgGGCCUGCGGaCGCGAgccCGcGuCCGCCg -3'
miRNA:   3'- -GCgCUGGGUGUC-GCGCU---GC-C-GGCGGg -5'
21606 5' -63.5 NC_004812.1 + 86727 0.66 0.602113
Target:  5'- aGCGGCCgGacgacgacggcgacCAGCGCcg-GGCCGaCCCg -3'
miRNA:   3'- gCGCUGGgU--------------GUCGCGcugCCGGC-GGG- -5'
21606 5' -63.5 NC_004812.1 + 119257 0.66 0.61458
Target:  5'- cCG-GGCCCGCGGuCGUcccGGCGGUCcCCCc -3'
miRNA:   3'- -GCgCUGGGUGUC-GCG---CUGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 76842 0.66 0.604988
Target:  5'- gCGCG-CCUgcGCGGCGUcgGGCaGGCaCGUCCa -3'
miRNA:   3'- -GCGCuGGG--UGUCGCG--CUG-CCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 37457 0.66 0.585863
Target:  5'- gCGUGGuccagUCCGCGGgGCGguACGGCCGgUCg -3'
miRNA:   3'- -GCGCU-----GGGUGUCgCGC--UGCCGGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 50555 0.66 0.621302
Target:  5'- gCGCGACCgCugGagccucguggccgaGCGcCGGCGGCagGCCg -3'
miRNA:   3'- -GCGCUGG-GugU--------------CGC-GCUGCCGg-CGGg -5'
21606 5' -63.5 NC_004812.1 + 46676 0.66 0.585863
Target:  5'- gGCaGCuCCGCuccgauaugaGGCGCGACGG-CGCUCu -3'
miRNA:   3'- gCGcUG-GGUG----------UCGCGCUGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 56428 0.66 0.585863
Target:  5'- uGCGGUCCGCcaGGCGCcgGGCGaucGUCGCCCc -3'
miRNA:   3'- gCGCUGGGUG--UCGCG--CUGC---CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 18178 0.66 0.61458
Target:  5'- aGCGGgucCCCGCGGUcCGACGG-CGUCUn -3'
miRNA:   3'- gCGCU---GGGUGUCGcGCUGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 5032 0.66 0.604988
Target:  5'- gGCGGCaggcgggGCAGCGCcGCGGUCacggggGCCCg -3'
miRNA:   3'- gCGCUGgg-----UGUCGCGcUGCCGG------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 126437 0.66 0.585863
Target:  5'- gCGCGccgaGCCCGCcGCGCGcuccCGGCUguggagGCCUa -3'
miRNA:   3'- -GCGC----UGGGUGuCGCGCu---GCCGG------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 50069 0.66 0.585863
Target:  5'- cCGCG-CCCGCugcgagguggGGCGCGugcUGGCCGUg- -3'
miRNA:   3'- -GCGCuGGGUG----------UCGCGCu--GCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 67330 0.66 0.61458
Target:  5'- cCGgGGCuCCGCGccGCGCcGCGGCCuGCgCg -3'
miRNA:   3'- -GCgCUG-GGUGU--CGCGcUGCCGG-CGgG- -5'
21606 5' -63.5 NC_004812.1 + 103186 0.66 0.61458
Target:  5'- gCGCGGCCCcgGGCuccuCGGUGGCCGCgCu -3'
miRNA:   3'- -GCGCUGGGugUCGc---GCUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 86892 0.66 0.608823
Target:  5'- gCGCGACCC-CAGCcuGCugcugaacuacuucuGuCGGUgCGCCCg -3'
miRNA:   3'- -GCGCUGGGuGUCG--CG---------------CuGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 53847 0.66 0.585863
Target:  5'- aGCGGUCCGCGGCGUa--GGCCGUg- -3'
miRNA:   3'- gCGCUGGGUGUCGCGcugCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 106403 0.66 0.602113
Target:  5'- cCGCucGGCCuCACGGCcccggcguuccucuGCGcCGGCCacggGCCCa -3'
miRNA:   3'- -GCG--CUGG-GUGUCG--------------CGCuGCCGG----CGGG- -5'
21606 5' -63.5 NC_004812.1 + 65761 0.66 0.61458
Target:  5'- cCGCGGCgCCgGCuuccGCGCcGCGGgCGCCg -3'
miRNA:   3'- -GCGCUG-GG-UGu---CGCGcUGCCgGCGGg -5'
21606 5' -63.5 NC_004812.1 + 81341 0.66 0.613621
Target:  5'- gGUGA-UCACGGCGCGcaggcccgccaggGCGGCCGUg- -3'
miRNA:   3'- gCGCUgGGUGUCGCGC-------------UGCCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.