miRNA display CGI

Results 81 - 100 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	1796	0.66	0.61458
	Target:  5'- nCGCccCgCCGCAGCaugGCGGacgucggGGCCGCCCc -3' miRNA:   3'- -GCGcuG-GGUGUCG---CGCUg------CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	54391	0.66	0.595413
	Target:  5'- gGCG-CCCGCgGGCaCGGCcggGGCUGCUCa -3' miRNA:   3'- gCGCuGGGUG-UCGcGCUG---CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	76350	0.66	0.624184
	Target:  5'- cCGCcACCgC-CAGgucCGCGGCcGCCGCCCc -3' miRNA:   3'- -GCGcUGG-GuGUC---GCGCUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	7840	0.66	0.633794
	Target:  5'- gGCGGCUCucuCGGgGCGGgGGUCGgUCg -3' miRNA:   3'- gCGCUGGGu--GUCgCGCUgCCGGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	140326	0.66	0.62995
	Target:  5'- uGCGGuCUCuucuguucgucguCGGCGCGugGGUgGCCg -3' miRNA:   3'- gCGCU-GGGu------------GUCGCGCugCCGgCGGg -5'
21606	5'	-63.5	NC_004812.1	+	108839	0.66	0.632833
	Target:  5'- uCGCGagccgacGCCCcCAGCGCcGCGGCgcugaccucguuCGCCg -3' miRNA:   3'- -GCGC-------UGGGuGUCGCGcUGCCG------------GCGGg -5'
21606	5'	-63.5	NC_004812.1	+	122643	0.66	0.595413
	Target:  5'- cCGCcGCCCAcCGGCGaGGCuGUCGUCCu -3' miRNA:   3'- -GCGcUGGGU-GUCGCgCUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	96247	0.66	0.624184
	Target:  5'- aCGuCGACCCugAcguccgagGCGCgGGCGGgCCuggcGCCCc -3' miRNA:   3'- -GC-GCUGGGugU--------CGCG-CUGCC-GG----CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	154000	0.66	0.621302
	Target:  5'- cCGCGGCgccaacgugcgcuaCCGC-GCGCGcACGcGCCucggGCCCg -3' miRNA:   3'- -GCGCUG--------------GGUGuCGCGC-UGC-CGG----CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	99374	0.66	0.624184
	Target:  5'- uCGcCGAgCCGCAGCGcCGugucggcgcuGCGGCgGCUg -3' miRNA:   3'- -GC-GCUgGGUGUCGC-GC----------UGCCGgCGGg -5'
21606	5'	-63.5	NC_004812.1	+	119257	0.66	0.61458
	Target:  5'- cCG-GGCCCGCGGuCGUcccGGCGGUCcCCCc -3' miRNA:   3'- -GCgCUGGGUGUC-GCG---CUGCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	58343	0.66	0.624184
	Target:  5'- uCGCG-UCCAcCAGCGCG-CGGgucCCGgCCu -3' miRNA:   3'- -GCGCuGGGU-GUCGCGCuGCC---GGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	137073	0.66	0.585863
	Target:  5'- uCGCGAUCCACcGCGCccuGAC-GCCggGCUCg -3' miRNA:   3'- -GCGCUGGGUGuCGCG---CUGcCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	81439	0.66	0.595413
	Target:  5'- cCGgGGCCCAgGGCcccagGCGAUcgggGGCCuCCCc -3' miRNA:   3'- -GCgCUGGGUgUCG-----CGCUG----CCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	15108	0.66	0.633794
	Target:  5'- aGCG-CCUGguGCGCcgguACGGCggCGCCCc -3' miRNA:   3'- gCGCuGGGUguCGCGc---UGCCG--GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	80032	0.66	0.604988
	Target:  5'- uCGaCGGCCgagCACAuGCGCGGggggucgcugcCGGCCgagGCCCg -3' miRNA:   3'- -GC-GCUGG---GUGU-CGCGCU-----------GCCGG---CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	32134	0.66	0.595413
	Target:  5'- gGCcgGACgCCACGGCcgggcccccgccGCGGCgGGgCGCCCc -3' miRNA:   3'- gCG--CUG-GGUGUCG------------CGCUG-CCgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	106024	0.66	0.604988
	Target:  5'- gGCGAUCCugaucgccgccaACGGCGCGAC-GCagggGUCCg -3' miRNA:   3'- gCGCUGGG------------UGUCGCGCUGcCGg---CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	75264	0.66	0.604988
	Target:  5'- gCGCGGa-C-CAGCGCGuccuUGGCCucGCCCa -3' miRNA:   3'- -GCGCUggGuGUCGCGCu---GCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	18178	0.66	0.61458
	Target:  5'- aGCGGgucCCCGCGGUcCGACGG-CGUCUn -3' miRNA:   3'- gCGCU---GGGUGUCGcGCUGCCgGCGGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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