miRNA display CGI

Results 101 - 120 of 1515 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	111769	0.66	0.624184
	Target:  5'- -cCGGCCCGCAuCGgGACGGCgGUg- -3' miRNA:   3'- gcGCUGGGUGUcGCgCUGCCGgCGgg -5'
21606	5'	-63.5	NC_004812.1	+	95589	0.66	0.59637
	Target:  5'- cCGCG-CCCGCgcgcgGGCGCGGCagcagcaacggcaccGGgccgggcuccaccuCCGCCCa -3' miRNA:   3'- -GCGCuGGGUG-----UCGCGCUG---------------CC--------------GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	127022	0.66	0.624184
	Target:  5'- nCGCG--CCGCcGCGCGAgGGCaugccgccgcCGCCCc -3' miRNA:   3'- -GCGCugGGUGuCGCGCUgCCG----------GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	47319	0.66	0.61458
	Target:  5'- gGCGACaCCGCcagcaAGCGCGAgcaaCGGgCGaCCg -3' miRNA:   3'- gCGCUG-GGUG-----UCGCGCU----GCCgGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	140326	0.66	0.62995
	Target:  5'- uGCGGuCUCuucuguucgucguCGGCGCGugGGUgGCCg -3' miRNA:   3'- gCGCU-GGGu------------GUCGCGCugCCGgCGGg -5'
21606	5'	-63.5	NC_004812.1	+	76350	0.66	0.624184
	Target:  5'- cCGCcACCgC-CAGgucCGCGGCcGCCGCCCc -3' miRNA:   3'- -GCGcUGG-GuGUC---GCGCUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	19984	0.66	0.585863
	Target:  5'- gGCGAUCgACAccucggcaaagcGCGCGGCG-CCGUCUc -3' miRNA:   3'- gCGCUGGgUGU------------CGCGCUGCcGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	75264	0.66	0.604988
	Target:  5'- gCGCGGa-C-CAGCGCGuccuUGGCCucGCCCa -3' miRNA:   3'- -GCGCUggGuGUCGCGCu---GCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	42326	0.66	0.604988
	Target:  5'- gCGCuGACCCcgcucCAGaagcuCGCGACGGCCuaCUa -3' miRNA:   3'- -GCG-CUGGGu----GUC-----GCGCUGCCGGcgGG- -5'
21606	5'	-63.5	NC_004812.1	+	101003	0.66	0.633794
	Target:  5'- gGCcGCCUcgcGCGGCGCGaggcaGCGGaUCGCCUc -3' miRNA:   3'- gCGcUGGG---UGUCGCGC-----UGCC-GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	1796	0.66	0.61458
	Target:  5'- nCGCccCgCCGCAGCaugGCGGacgucggGGCCGCCCc -3' miRNA:   3'- -GCGcuG-GGUGUCG---CGCUg------CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	114370	0.66	0.621302
	Target:  5'- uCGCGGCCCcguacugccugaacGCGuCGUGGCaGGCCgaagacGCCCu -3' miRNA:   3'- -GCGCUGGG--------------UGUcGCGCUG-CCGG------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	86727	0.66	0.602113
	Target:  5'- aGCGGCCgGacgacgacggcgacCAGCGCcg-GGCCGaCCCg -3' miRNA:   3'- gCGCUGGgU--------------GUCGCGcugCCGGC-GGG- -5'
21606	5'	-63.5	NC_004812.1	+	81341	0.66	0.613621
	Target:  5'- gGUGA-UCACGGCGCGcaggcccgccaggGCGGCCGUg- -3' miRNA:   3'- gCGCUgGGUGUCGCGC-------------UGCCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	7840	0.66	0.633794
	Target:  5'- gGCGGCUCucuCGGgGCGGgGGUCGgUCg -3' miRNA:   3'- gCGCUGGGu--GUCgCGCUgCCGGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	103186	0.66	0.61458
	Target:  5'- gCGCGGCCCcgGGCuccuCGGUGGCCGCgCu -3' miRNA:   3'- -GCGCUGGGugUCGc---GCUGCCGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	24017	0.66	0.61458
	Target:  5'- uCGagGACCCcgaGGaCGUGACGuaCGCCCg -3' miRNA:   3'- -GCg-CUGGGug-UC-GCGCUGCcgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	155574	0.66	0.633794
	Target:  5'- aGgGGCgCGC-GCG-GGCGGCCggGCCCu -3' miRNA:   3'- gCgCUGgGUGuCGCgCUGCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	19425	0.66	0.595413
	Target:  5'- gCGUGGCCgCGCGGcCGCa--GGaCCGCCUc -3' miRNA:   3'- -GCGCUGG-GUGUC-GCGcugCC-GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	80095	0.66	0.624184
	Target:  5'- -uCGACCagGCAGcCGuCGACGGCCucgGCCg -3' miRNA:   3'- gcGCUGGg-UGUC-GC-GCUGCCGG---CGGg -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home