miRNA display CGI

Results 121 - 140 of 1515 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	106403	0.66	0.602113
	Target:  5'- cCGCucGGCCuCACGGCcccggcguuccucuGCGcCGGCCacggGCCCa -3' miRNA:   3'- -GCG--CUGG-GUGUCG--------------CGCuGCCGG----CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	75264	0.66	0.604988
	Target:  5'- gCGCGGa-C-CAGCGCGuccuUGGCCucGCCCa -3' miRNA:   3'- -GCGCUggGuGUCGCGCu---GCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	155574	0.66	0.633794
	Target:  5'- aGgGGCgCGC-GCG-GGCGGCCggGCCCu -3' miRNA:   3'- gCgCUGgGUGuCGCgCUGCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	83289	0.66	0.592546
	Target:  5'- aCGCgGAUCCA-GGCGCaggcagcucucggaGACGGaCCGCCa -3' miRNA:   3'- -GCG-CUGGGUgUCGCG--------------CUGCC-GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	138972	0.66	0.585863
	Target:  5'- gGCGACCgAagcccCGGCacCGACGGCggagcgguuCGCCCg -3' miRNA:   3'- gCGCUGGgU-----GUCGc-GCUGCCG---------GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	77068	0.66	0.624184
	Target:  5'- nCGCGcGCCUcgggcgACAGCucguccgugaGCuuGGCGGCCGCCa -3' miRNA:   3'- -GCGC-UGGG------UGUCG----------CG--CUGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	108839	0.66	0.632833
	Target:  5'- uCGCGagccgacGCCCcCAGCGCcGCGGCgcugaccucguuCGCCg -3' miRNA:   3'- -GCGC-------UGGGuGUCGCGcUGCCG------------GCGGg -5'
21606	5'	-63.5	NC_004812.1	+	119292	0.66	0.633794
	Target:  5'- gGCGGgCUguACGGCGCGccguacccCGGCguCGCCCu -3' miRNA:   3'- gCGCUgGG--UGUCGCGCu-------GCCG--GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	15108	0.66	0.633794
	Target:  5'- aGCG-CCUGguGCGCcgguACGGCggCGCCCc -3' miRNA:   3'- gCGCuGGGUguCGCGc---UGCCG--GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	86727	0.66	0.602113
	Target:  5'- aGCGGCCgGacgacgacggcgacCAGCGCcg-GGCCGaCCCg -3' miRNA:   3'- gCGCUGGgU--------------GUCGCGcugCCGGC-GGG- -5'
21606	5'	-63.5	NC_004812.1	+	147511	0.66	0.585863
	Target:  5'- gGUGGCCCcgaGGCGcCGucuuCGcGCCGCCg -3' miRNA:   3'- gCGCUGGGug-UCGC-GCu---GC-CGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	119257	0.66	0.61458
	Target:  5'- cCG-GGCCCGCGGuCGUcccGGCGGUCcCCCc -3' miRNA:   3'- -GCgCUGGGUGUC-GCG---CUGCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	50069	0.66	0.585863
	Target:  5'- cCGCG-CCCGCugcgagguggGGCGCGugcUGGCCGUg- -3' miRNA:   3'- -GCGCuGGGUG----------UCGCGCu--GCCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	76350	0.66	0.624184
	Target:  5'- cCGCcACCgC-CAGgucCGCGGCcGCCGCCCc -3' miRNA:   3'- -GCGcUGG-GuGUC---GCGCUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	85632	0.66	0.599241
	Target:  5'- cCGCGGgcCCCGCGGUGCucucccgggcaggucGAgGcgccgcaguacGCCGCCCg -3' miRNA:   3'- -GCGCU--GGGUGUCGCG---------------CUgC-----------CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	54391	0.66	0.595413
	Target:  5'- gGCG-CCCGCgGGCaCGGCcggGGCUGCUCa -3' miRNA:   3'- gCGCuGGGUG-UCGcGCUG---CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	117506	0.66	0.585863
	Target:  5'- aCGCgGGCCCcCGGcCGCucuCGGCCGgacCCCg -3' miRNA:   3'- -GCG-CUGGGuGUC-GCGcu-GCCGGC---GGG- -5'
21606	5'	-63.5	NC_004812.1	+	91526	0.66	0.585863
	Target:  5'- cCGgGGCCUGCGGaCGCGAgccCGcGuCCGCCg -3' miRNA:   3'- -GCgCUGGGUGUC-GCGCU---GC-C-GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	383	0.66	0.595413
	Target:  5'- gGCGcauCCCGCGGCGCc----CCGCCCc -3' miRNA:   3'- gCGCu--GGGUGUCGCGcugccGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	19425	0.66	0.595413
	Target:  5'- gCGUGGCCgCGCGGcCGCa--GGaCCGCCUc -3' miRNA:   3'- -GCGCUGG-GUGUC-GCGcugCC-GGCGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home