miRNA display CGI


Results 61 - 80 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 46640 0.79 0.110984
Target:  5'- aCGCGggcGCCCggaaacaGCAGCGCcACGGCCGCCa -3'
miRNA:   3'- -GCGC---UGGG-------UGUCGCGcUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 83366 0.79 0.100796
Target:  5'- gCGcCGGCCC-CAGgGCGGCGGCgGUCCg -3'
miRNA:   3'- -GC-GCUGGGuGUCgCGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 19627 0.79 0.100796
Target:  5'- gCGCGuccgguCUCGCGGCGaCGugGGCCGCCa -3'
miRNA:   3'- -GCGCu-----GGGUGUCGC-GCugCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 118428 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 93594 0.79 0.098329
Target:  5'- gCGCGcGCUCGCGGaCGCGGCGGCCcgcgcuuccGCCCg -3'
miRNA:   3'- -GCGC-UGGGUGUC-GCGCUGCCGG---------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 14824 0.79 0.111258
Target:  5'- gCGCGGCCCGCccccccGCGCGGCcguucgacGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGu-----CGCGCUGc-------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 74851 0.79 0.100796
Target:  5'- cCGCGGCCUccaGCgAGCGCcgcagGGCGGCCGUCCg -3'
miRNA:   3'- -GCGCUGGG---UG-UCGCG-----CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 80245 0.79 0.098329
Target:  5'- gGCG-CCCugGGgGCGGCGGCCGCg- -3'
miRNA:   3'- gCGCuGGGugUCgCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 9122 0.79 0.111258
Target:  5'- cCG-GACCCccGCGGCGCcACGGUCGCCCu -3'
miRNA:   3'- -GCgCUGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 84641 0.79 0.098329
Target:  5'- gCGCGugagccuCCCGCGGCGCGcgucgcggcAgGGCCGCCCc -3'
miRNA:   3'- -GCGCu------GGGUGUCGCGC---------UgCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 149329 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 73717 0.79 0.100547
Target:  5'- cCGC-ACCCGCGaggagguGCGCGuguCGGCCGCCCu -3'
miRNA:   3'- -GCGcUGGGUGU-------CGCGCu--GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 26186 0.79 0.108551
Target:  5'- cCGCGGgCCGCAGCgaGCGGCGGCgCGCgCg -3'
miRNA:   3'- -GCGCUgGGUGUCG--CGCUGCCG-GCGgG- -5'
21606 5' -63.5 NC_004812.1 + 49149 0.79 0.106956
Target:  5'- aGCgGGCCCugGGgaucggcggcgagucCGCGACGGCCGCCg -3'
miRNA:   3'- gCG-CUGGGugUC---------------GCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 43841 0.79 0.106956
Target:  5'- gCGCGGCUCGCGGCGcCGACGuccgggcgcggcggcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGUCGC-GCUGC---------------CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 125828 0.79 0.105906
Target:  5'- cCGCGGcCCCGCAgGCGgGGcCGGCuCGCCCg -3'
miRNA:   3'- -GCGCU-GGGUGU-CGCgCU-GCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 57912 0.79 0.103066
Target:  5'- cCGCcGCCCcCGGCGCGGCGGUucgaccgCGCCCg -3'
miRNA:   3'- -GCGcUGGGuGUCGCGCUGCCG-------GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 116542 0.78 0.11319
Target:  5'- cCGCcGCCCggaaaagcgcacgaGCGGcCGCGGCGGCCGCUCg -3'
miRNA:   3'- -GCGcUGGG--------------UGUC-GCGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155998 0.78 0.122729
Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3'
miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 100524 0.78 0.114028
Target:  5'- gGCG-CCCACgucgGGCGCGGCgaGGCCGCCg -3'
miRNA:   3'- gCGCuGGGUG----UCGCGCUG--CCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.