miRNA display CGI

Results 81 - 100 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	83364	0.78	0.114028
	Target:  5'- gGCGGCCCGCcugGGgGCG--GGCCGCCCg -3' miRNA:   3'- gCGCUGGGUG---UCgCGCugCCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	100524	0.78	0.114028
	Target:  5'- gGCG-CCCACgucgGGCGCGGCgaGGCCGCCg -3' miRNA:   3'- gCGCuGGGUG----UCGCGCUG--CCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	116542	0.78	0.11319
	Target:  5'- cCGCcGCCCggaaaagcgcacgaGCGGcCGCGGCGGCCGCUCg -3' miRNA:   3'- -GCGcUGGG--------------UGUC-GCGCUGCCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	125240	0.78	0.128868
	Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3' miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	144402	0.78	0.128555
	Target:  5'- gGCGGCgUgguacgaGCGGCGCGACGGCgGCUCg -3' miRNA:   3'- gCGCUGgG-------UGUCGCGCUGCCGgCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	73881	0.78	0.125764
	Target:  5'- gGCGGCgUACAGCuCGGCGGCCGCggCCg -3' miRNA:   3'- gCGCUGgGUGUCGcGCUGCCGGCG--GG- -5'
21606	5'	-63.5	NC_004812.1	+	155998	0.78	0.122729
	Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3' miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	15966	0.78	0.114028
	Target:  5'- gCGUGGCgCCGCcGCGCGGCGGCgCGUCUa -3' miRNA:   3'- -GCGCUG-GGUGuCGCGCUGCCG-GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	107198	0.78	0.114028
	Target:  5'- gGCGGCCCggggccACGGCGCG--GGCCGCCUg -3' miRNA:   3'- gCGCUGGG------UGUCGCGCugCCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	69550	0.78	0.114028
	Target:  5'- cCGCGccccuGCCCGCGGCGC--CGGCCGCgCCg -3' miRNA:   3'- -GCGC-----UGGGUGUCGCGcuGCCGGCG-GG- -5'
21606	5'	-63.5	NC_004812.1	+	156141	0.78	0.128868
	Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3' miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	108425	0.78	0.126997
	Target:  5'- gGCGGCCUGCagggccgcguucuccAGCGCcGCGGCCGCCg -3' miRNA:   3'- gCGCUGGGUG---------------UCGCGcUGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	54627	0.78	0.125764
	Target:  5'- gCGCGACCCcccgcGCGG-GCGGCGGgCGUCCg -3' miRNA:   3'- -GCGCUGGG-----UGUCgCGCUGCCgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	76737	0.78	0.125764
	Target:  5'- uCGCcgGGCCCugGGCcCGGCGGCCGCUg -3' miRNA:   3'- -GCG--CUGGGugUCGcGCUGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	107424	0.78	0.114028
	Target:  5'- gGCcaGGCCCACcggccGCGCGGCGGCCGUCg -3' miRNA:   3'- gCG--CUGGGUGu----CGCGCUGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	143589	0.78	0.122729
	Target:  5'- cCGCGACCCcCGGCGaucaGGCCGCCUc -3' miRNA:   3'- -GCGCUGGGuGUCGCgcugCCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	30490	0.78	0.122729
	Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3' miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	94359	0.77	0.149025
	Target:  5'- gCGCGGCCC-CGGCGCGcUGGuUUGCCCu -3' miRNA:   3'- -GCGCUGGGuGUCGCGCuGCC-GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	115388	0.77	0.13529
	Target:  5'- gGCGGCgaCCGCAGCGCGuagucGCCGCCCc -3' miRNA:   3'- gCGCUG--GGUGUCGCGCugc--CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	103148	0.77	0.152652
	Target:  5'- cCG-GGCCCGCugcgucuggAGCGCGGgGGCCGCCg -3' miRNA:   3'- -GCgCUGGGUG---------UCGCGCUgCCGGCGGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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