miRNA display CGI


Results 101 - 120 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 106512 0.77 0.132043
Target:  5'- cCGCGGCgCGgGGCGcCGGCGGCCGCg- -3'
miRNA:   3'- -GCGCUGgGUgUCGC-GCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 139100 0.77 0.132043
Target:  5'- cCGCGACCgAgGGCGCGuCGGCgaCGUCCg -3'
miRNA:   3'- -GCGCUGGgUgUCGCGCuGCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 99124 0.77 0.131083
Target:  5'- gGCcagGACCCGCAgGUGgccgaagacgucucCGACGGCCGCCCg -3'
miRNA:   3'- gCG---CUGGGUGU-CGC--------------GCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 62129 0.77 0.130765
Target:  5'- gGCGGCCCggaggccggaucgGCGGCGCgGGCGGCCuccggguucuucggGCCCg -3'
miRNA:   3'- gCGCUGGG-------------UGUCGCG-CUGCCGG--------------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 123591 0.77 0.132043
Target:  5'- gGCGGCCgagCACAcGCGCGccCGGUCGCCCg -3'
miRNA:   3'- gCGCUGG---GUGU-CGCGCu-GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 41138 0.77 0.131723
Target:  5'- gCGCGGCCgCACGcGCGCGGCGagcccagcggcgcGCCGCCa -3'
miRNA:   3'- -GCGCUGG-GUGU-CGCGCUGC-------------CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 32846 0.77 0.13996
Target:  5'- gGCGGCCCcCAGgGCGGCcagcggcaccccggaGGCCGCCa -3'
miRNA:   3'- gCGCUGGGuGUCgCGCUG---------------CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 124446 0.77 0.141663
Target:  5'- cCGCGGCCgGCGGaccaacgggcggcCGCGGC-GCCGCCCg -3'
miRNA:   3'- -GCGCUGGgUGUC-------------GCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 143299 0.77 0.142006
Target:  5'- -cCGACCCcCGGCGCGGCGGagacgcggaCGCCCc -3'
miRNA:   3'- gcGCUGGGuGUCGCGCUGCCg--------GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 73043 0.77 0.13529
Target:  5'- uGCGACCugCACGGgGCGcACGGCCuCCCg -3'
miRNA:   3'- gCGCUGG--GUGUCgCGC-UGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 32582 0.77 0.138611
Target:  5'- cCGCGGCCCGCc-CGCGGCGGgggaUGCCCu -3'
miRNA:   3'- -GCGCUGGGUGucGCGCUGCCg---GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 103148 0.77 0.152652
Target:  5'- cCG-GGCCCGCugcgucuggAGCGCGGgGGCCGCCg -3'
miRNA:   3'- -GCgCUGGGUG---------UCGCGCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 45590 0.77 0.15192
Target:  5'- gGCGACCCAguagugcucccgcucCAGCGCccucaugggcgcgggGACGGCCGCgCu -3'
miRNA:   3'- gCGCUGGGU---------------GUCGCG---------------CUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 98380 0.77 0.149025
Target:  5'- aCGgGuCCUcggGCGGCGCGGCGGCCGCg- -3'
miRNA:   3'- -GCgCuGGG---UGUCGCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 68877 0.77 0.149025
Target:  5'- cCGCGGCCC-CGGCGCc-CGcGCCGCCUc -3'
miRNA:   3'- -GCGCUGGGuGUCGCGcuGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 106425 0.77 0.13529
Target:  5'- cCGCGGCgcucgaagaUCGCGGCGCuGGCGGCCGUCUc -3'
miRNA:   3'- -GCGCUG---------GGUGUCGCG-CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154505 0.77 0.149025
Target:  5'- uGgGACUgGgAGCGCGGCccgGGCCGCCCc -3'
miRNA:   3'- gCgCUGGgUgUCGCGCUG---CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 40290 0.77 0.145477
Target:  5'- cCGCcGCCaGCAGgGCGAcaaCGGCCGCCCc -3'
miRNA:   3'- -GCGcUGGgUGUCgCGCU---GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 132102 0.77 0.132043
Target:  5'- cCGCagccCCCGCGGCGCGGgGGCCcCCCg -3'
miRNA:   3'- -GCGcu--GGGUGUCGCGCUgCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 94359 0.77 0.149025
Target:  5'- gCGCGGCCC-CGGCGCGcUGGuUUGCCCu -3'
miRNA:   3'- -GCGCUGGGuGUCGCGCuGCC-GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.