Results 41 - 60 of 1515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21606 | 5' | -63.5 | NC_004812.1 | + | 103262 | 0.81 | 0.076616 |
Target: 5'- gCGCaGGCgCGCgGGgGCGACGGCCGCCCc -3' miRNA: 3'- -GCG-CUGgGUG-UCgCGCUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 8353 | 0.81 | 0.076616 |
Target: 5'- gCGCGGccgcCCCACcGCGuCGGCGGCCGCCg -3' miRNA: 3'- -GCGCU----GGGUGuCGC-GCUGCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 67778 | 0.81 | 0.080354 |
Target: 5'- gGCGGCCCGgGGCGCgGGCGGCUucggggggggcggGCCCg -3' miRNA: 3'- gCGCUGGGUgUCGCG-CUGCCGG-------------CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 48234 | 0.81 | 0.080556 |
Target: 5'- cCGCGGCCCagggccuccuGCAGCGCGGCGacGUCGUCCg -3' miRNA: 3'- -GCGCUGGG----------UGUCGCGCUGC--CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 100701 | 0.81 | 0.080556 |
Target: 5'- gGCGugUCGCAGCGCGACcGUCGCCa -3' miRNA: 3'- gCGCugGGUGUCGCGCUGcCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 91535 | 0.81 | 0.080556 |
Target: 5'- gCGCGG-CCAgGGCgGCGGCGGCCGCCg -3' miRNA: 3'- -GCGCUgGGUgUCG-CGCUGCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 83180 | 0.8 | 0.082597 |
Target: 5'- gCGCGGCCCcggaGCucgcggcgggaGGCGCGGCGGCCGCgCu -3' miRNA: 3'- -GCGCUGGG----UG-----------UCGCGCUGCCGGCGgG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 20542 | 0.8 | 0.082597 |
Target: 5'- gGcCGACCUGCGGCGCG-UGGCCGCgCCg -3' miRNA: 3'- gC-GCUGGGUGUCGCGCuGCCGGCG-GG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 84703 | 0.8 | 0.084688 |
Target: 5'- aGCG-CCCGCGGCGCcGC-GCCGCCCg -3' miRNA: 3'- gCGCuGGGUGUCGCGcUGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 127730 | 0.8 | 0.0877 |
Target: 5'- cCGCGGCCCGCggccagcgcacgcgcGGCGCGGCGGCgggGUCCg -3' miRNA: 3'- -GCGCUGGGUG---------------UCGCGCUGCCGg--CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 138727 | 0.8 | 0.089022 |
Target: 5'- gGCgGGCCCGCGGCGUGccggcCGGUCGCCCc -3' miRNA: 3'- gCG-CUGGGUGUCGCGCu----GCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 82543 | 0.8 | 0.089022 |
Target: 5'- gGCGGCCCGC-GCGCGcccgccGCuGCCGCCCg -3' miRNA: 3'- gCGCUGGGUGuCGCGC------UGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 48661 | 0.8 | 0.093566 |
Target: 5'- cCGCGcCUCGCcGCGCGAUGGCCGgCCu -3' miRNA: 3'- -GCGCuGGGUGuCGCGCUGCCGGCgGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 60088 | 0.8 | 0.093566 |
Target: 5'- gGCGGCCCGCgccagguaGGCGcCGAUGGCCgugGCCCg -3' miRNA: 3'- gCGCUGGGUG--------UCGC-GCUGCCGG---CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 156577 | 0.8 | 0.095682 |
Target: 5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3' miRNA: 3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 125676 | 0.8 | 0.095682 |
Target: 5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3' miRNA: 3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 167 | 0.8 | 0.095682 |
Target: 5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3' miRNA: 3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 112981 | 0.8 | 0.09592 |
Target: 5'- gGCGAUggaUCGCGGCGCcGCGGCCGCCg -3' miRNA: 3'- gCGCUG---GGUGUCGCGcUGCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 98410 | 0.8 | 0.09592 |
Target: 5'- gGCGGCgCCGCAGCgucucgguGCGGCGGCCGCg- -3' miRNA: 3'- gCGCUG-GGUGUCG--------CGCUGCCGGCGgg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 118428 | 0.79 | 0.098329 |
Target: 5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3' miRNA: 3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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