miRNA display CGI


Results 81 - 100 of 1515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 83364 0.78 0.114028
Target:  5'- gGCGGCCCGCcugGGgGCG--GGCCGCCCg -3'
miRNA:   3'- gCGCUGGGUG---UCgCGCugCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 15966 0.78 0.114028
Target:  5'- gCGUGGCgCCGCcGCGCGGCGGCgCGUCUa -3'
miRNA:   3'- -GCGCUG-GGUGuCGCGCUGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 69550 0.78 0.114028
Target:  5'- cCGCGccccuGCCCGCGGCGC--CGGCCGCgCCg -3'
miRNA:   3'- -GCGC-----UGGGUGUCGCGcuGCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 107198 0.78 0.114028
Target:  5'- gGCGGCCCggggccACGGCGCG--GGCCGCCUg -3'
miRNA:   3'- gCGCUGGG------UGUCGCGCugCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 107424 0.78 0.114028
Target:  5'- gGCcaGGCCCACcggccGCGCGGCGGCCGUCg -3'
miRNA:   3'- gCG--CUGGGUGu----CGCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 87035 0.78 0.119469
Target:  5'- aCGCGAUCUacgaacuGCAGCGCauguucgugGACGuGCCGCCCa -3'
miRNA:   3'- -GCGCUGGG-------UGUCGCG---------CUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 143589 0.78 0.122729
Target:  5'- cCGCGACCCcCGGCGaucaGGCCGCCUc -3'
miRNA:   3'- -GCGCUGGGuGUCGCgcugCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155998 0.78 0.122729
Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3'
miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 49408 0.78 0.122729
Target:  5'- gGCGGCCCGCGcCGUGGCcccgGGCCGCCg -3'
miRNA:   3'- gCGCUGGGUGUcGCGCUG----CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 30490 0.78 0.122729
Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3'
miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 73881 0.78 0.125764
Target:  5'- gGCGGCgUACAGCuCGGCGGCCGCggCCg -3'
miRNA:   3'- gCGCUGgGUGUCGcGCUGCCGGCG--GG- -5'
21606 5' -63.5 NC_004812.1 + 54627 0.78 0.125764
Target:  5'- gCGCGACCCcccgcGCGG-GCGGCGGgCGUCCg -3'
miRNA:   3'- -GCGCUGGG-----UGUCgCGCUGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 76737 0.78 0.125764
Target:  5'- uCGCcgGGCCCugGGCcCGGCGGCCGCUg -3'
miRNA:   3'- -GCG--CUGGGugUCGcGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 108425 0.78 0.126997
Target:  5'- gGCGGCCUGCagggccgcguucuccAGCGCcGCGGCCGCCg -3'
miRNA:   3'- gCGCUGGGUG---------------UCGCGcUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 144402 0.78 0.128555
Target:  5'- gGCGGCgUgguacgaGCGGCGCGACGGCgGCUCg -3'
miRNA:   3'- gCGCUGgG-------UGUCGCGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 156141 0.78 0.128868
Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3'
miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 125240 0.78 0.128868
Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3'
miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 62129 0.77 0.130765
Target:  5'- gGCGGCCCggaggccggaucgGCGGCGCgGGCGGCCuccggguucuucggGCCCg -3'
miRNA:   3'- gCGCUGGG-------------UGUCGCG-CUGCCGG--------------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 99124 0.77 0.131083
Target:  5'- gGCcagGACCCGCAgGUGgccgaagacgucucCGACGGCCGCCCg -3'
miRNA:   3'- gCG---CUGGGUGU-CGC--------------GCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 41138 0.77 0.131723
Target:  5'- gCGCGGCCgCACGcGCGCGGCGagcccagcggcgcGCCGCCa -3'
miRNA:   3'- -GCGCUGG-GUGU-CGCGCUGC-------------CGGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.