Results 101 - 120 of 1515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21606 | 5' | -63.5 | NC_004812.1 | + | 139100 | 0.77 | 0.132043 |
Target: 5'- cCGCGACCgAgGGCGCGuCGGCgaCGUCCg -3' miRNA: 3'- -GCGCUGGgUgUCGCGCuGCCG--GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 123591 | 0.77 | 0.132043 |
Target: 5'- gGCGGCCgagCACAcGCGCGccCGGUCGCCCg -3' miRNA: 3'- gCGCUGG---GUGU-CGCGCu-GCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 132102 | 0.77 | 0.132043 |
Target: 5'- cCGCagccCCCGCGGCGCGGgGGCCcCCCg -3' miRNA: 3'- -GCGcu--GGGUGUCGCGCUgCCGGcGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 106512 | 0.77 | 0.132043 |
Target: 5'- cCGCGGCgCGgGGCGcCGGCGGCCGCg- -3' miRNA: 3'- -GCGCUGgGUgUCGC-GCUGCCGGCGgg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 106425 | 0.77 | 0.13529 |
Target: 5'- cCGCGGCgcucgaagaUCGCGGCGCuGGCGGCCGUCUc -3' miRNA: 3'- -GCGCUG---------GGUGUCGCG-CUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 73043 | 0.77 | 0.13529 |
Target: 5'- uGCGACCugCACGGgGCGcACGGCCuCCCg -3' miRNA: 3'- gCGCUGG--GUGUCgCGC-UGCCGGcGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 115388 | 0.77 | 0.13529 |
Target: 5'- gGCGGCgaCCGCAGCGCGuagucGCCGCCCc -3' miRNA: 3'- gCGCUG--GGUGUCGCGCugc--CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 1681 | 0.77 | 0.138611 |
Target: 5'- cCGCGGCCCGCc-CGCGGCGGgggaUGCCCu -3' miRNA: 3'- -GCGCUGGGUGucGCGCUGCCg---GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 151705 | 0.77 | 0.138611 |
Target: 5'- aGCGAgCgGCGGCGCGcGCGcGCCGCCg -3' miRNA: 3'- gCGCUgGgUGUCGCGC-UGC-CGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 51628 | 0.77 | 0.138611 |
Target: 5'- gGCGGCCCGCGGcCGCGuGCGcGCCgagaGCCCc -3' miRNA: 3'- gCGCUGGGUGUC-GCGC-UGC-CGG----CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 32582 | 0.77 | 0.138611 |
Target: 5'- cCGCGGCCCGCc-CGCGGCGGgggaUGCCCu -3' miRNA: 3'- -GCGCUGGGUGucGCGCUGCCg---GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 32846 | 0.77 | 0.13996 |
Target: 5'- gGCGGCCCcCAGgGCGGCcagcggcaccccggaGGCCGCCa -3' miRNA: 3'- gCGCUGGGuGUCgCGCUG---------------CCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 155347 | 0.77 | 0.141663 |
Target: 5'- cCGCGGCCgGCGGaccaacgggcggcCGCGGC-GCCGCCCg -3' miRNA: 3'- -GCGCUGGgUGUC-------------GCGCUGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 124446 | 0.77 | 0.141663 |
Target: 5'- cCGCGGCCgGCGGaccaacgggcggcCGCGGC-GCCGCCCg -3' miRNA: 3'- -GCGCUGGgUGUC-------------GCGCUGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 120660 | 0.77 | 0.142006 |
Target: 5'- gGCGACggCCAcCAGCGaCGugcaguucaaGCGGCCGCCCg -3' miRNA: 3'- gCGCUG--GGU-GUCGC-GC----------UGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 143299 | 0.77 | 0.142006 |
Target: 5'- -cCGACCCcCGGCGCGGCGGagacgcggaCGCCCc -3' miRNA: 3'- gcGCUGGGuGUCGCGCUGCCg--------GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 98200 | 0.77 | 0.145477 |
Target: 5'- cCGCcGCCCcccCAGCcuccagGCGGCGGCCGCCUg -3' miRNA: 3'- -GCGcUGGGu--GUCG------CGCUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 40290 | 0.77 | 0.145477 |
Target: 5'- cCGCcGCCaGCAGgGCGAcaaCGGCCGCCCc -3' miRNA: 3'- -GCGcUGGgUGUCgCGCU---GCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 56446 | 0.77 | 0.145477 |
Target: 5'- gGCGGgCCugGCGGCGCGAUGagccccgccccGCCGCCCg -3' miRNA: 3'- gCGCUgGG--UGUCGCGCUGC-----------CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 138244 | 0.77 | 0.145477 |
Target: 5'- cCGCgGGCCCGCGuacGcCGCGGCGGCCGCg- -3' miRNA: 3'- -GCG-CUGGGUGU---C-GCGCUGCCGGCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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