miRNA display CGI


Results 81 - 100 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 18178 0.66 0.61458
Target:  5'- aGCGGgucCCCGCGGUcCGACGG-CGUCUn -3'
miRNA:   3'- gCGCU---GGGUGUCGcGCUGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 7049 0.66 0.61458
Target:  5'- cCGCGACUguggACcGCGCcAgGGCCGCuCCa -3'
miRNA:   3'- -GCGCUGGg---UGuCGCGcUgCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 80553 0.66 0.61458
Target:  5'- cCGCGccGgCCGCgAGCGCug-GGCCGCCg -3'
miRNA:   3'- -GCGC--UgGGUG-UCGCGcugCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 32697 0.66 0.61458
Target:  5'- nCGCccCgCCGCAGCaugGCGGacgucggGGCCGCCCc -3'
miRNA:   3'- -GCGcuG-GGUGUCG---CGCUg------CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 150158 0.66 0.61458
Target:  5'- cCG-GGCCCGCGGuCGUcccGGCGGUCcCCCc -3'
miRNA:   3'- -GCgCUGGGUGUC-GCG---CUGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 21253 0.66 0.61458
Target:  5'- cCGUGGCCCcagaAGCGCGcGCGGaCGCa- -3'
miRNA:   3'- -GCGCUGGGug--UCGCGC-UGCCgGCGgg -5'
21606 5' -63.5 NC_004812.1 + 10298 0.66 0.61458
Target:  5'- gCGcCGACgCCugAGCGCcgucuGCuGCCGUCCc -3'
miRNA:   3'- -GC-GCUG-GGugUCGCGc----UGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 119257 0.66 0.61458
Target:  5'- cCG-GGCCCGCGGuCGUcccGGCGGUCcCCCc -3'
miRNA:   3'- -GCgCUGGGUGUC-GCG---CUGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 4434 0.66 0.61458
Target:  5'- gGCGGCCCcggGCcGCGUGucc-CCGCCCg -3'
miRNA:   3'- gCGCUGGG---UGuCGCGCugccGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 2969 0.66 0.61458
Target:  5'- gCGCG-CCC--AGCGCcgagacgucgGGCGGCCgGUCCa -3'
miRNA:   3'- -GCGCuGGGugUCGCG----------CUGCCGG-CGGG- -5'
21606 5' -63.5 NC_004812.1 + 47319 0.66 0.61458
Target:  5'- gGCGACaCCGCcagcaAGCGCGAgcaaCGGgCGaCCg -3'
miRNA:   3'- gCGCUG-GGUG-----UCGCGCU----GCCgGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 37950 0.66 0.61458
Target:  5'- cCGCGACUguggACcGCGCcAgGGCCGCuCCa -3'
miRNA:   3'- -GCGCUGGg---UGuCGCGcUgCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 103186 0.66 0.61458
Target:  5'- gCGCGGCCCcgGGCuccuCGGUGGCCGCgCu -3'
miRNA:   3'- -GCGCUGGGugUCGc---GCUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 24017 0.66 0.61458
Target:  5'- uCGagGACCCcgaGGaCGUGACGuaCGCCCg -3'
miRNA:   3'- -GCg-CUGGGug-UC-GCGCUGCcgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 65761 0.66 0.61458
Target:  5'- cCGCGGCgCCgGCuuccGCGCcGCGGgCGCCg -3'
miRNA:   3'- -GCGCUG-GG-UGu---CGCGcUGCCgGCGGg -5'
21606 5' -63.5 NC_004812.1 + 1796 0.66 0.61458
Target:  5'- nCGCccCgCCGCAGCaugGCGGacgucggGGCCGCCCc -3'
miRNA:   3'- -GCGcuG-GGUGUCG---CGCUg------CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 80589 0.66 0.61458
Target:  5'- gGCGGCCCugGacCGCGugGagaaCCGCgCCg -3'
miRNA:   3'- gCGCUGGGugUc-GCGCugCc---GGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 76300 0.66 0.61458
Target:  5'- ----nUCCAgCAGCGCGGCGcggucGCCGUCCg -3'
miRNA:   3'- gcgcuGGGU-GUCGCGCUGC-----CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 67330 0.66 0.61458
Target:  5'- cCGgGGCuCCGCGccGCGCcGCGGCCuGCgCg -3'
miRNA:   3'- -GCgCUG-GGUGU--CGCGcUGCCGG-CGgG- -5'
21606 5' -63.5 NC_004812.1 + 23758 0.66 0.61458
Target:  5'- gCGCGACaCCaaGCAccGCGCGcgcuCGGCCaUCCg -3'
miRNA:   3'- -GCGCUG-GG--UGU--CGCGCu---GCCGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.