miRNA display CGI

Results 41 - 60 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	2598	0.66	0.633794
	Target:  5'- cCGCcGCCgACGGCaccggacucuccGCGcCGGCCccGCCCc -3' miRNA:   3'- -GCGcUGGgUGUCG------------CGCuGCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	2629	0.83	0.055178
	Target:  5'- cCGCGGCCCA-GGCGCGGCGGCgGCgCg -3' miRNA:   3'- -GCGCUGGGUgUCGCGCUGCCGgCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	2676	0.68	0.501854
	Target:  5'- gGCGGCCUcgACGcGCGCGAagacGCCggGCCCg -3' miRNA:   3'- gCGCUGGG--UGU-CGCGCUgc--CGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	2713	0.74	0.20755
	Target:  5'- aCGCGGCCggaggccagCACGGCGCGGCgcaGGUCGCgCg -3' miRNA:   3'- -GCGCUGG---------GUGUCGCGCUG---CCGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	2739	0.68	0.492822
	Target:  5'- gGCuGCCCAU-GCGCaACaGCUGCCCg -3' miRNA:   3'- gCGcUGGGUGuCGCGcUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	2809	0.69	0.44886
	Target:  5'- aCGUGG-CgGC-GCGCGACGGCgGgCCCg -3' miRNA:   3'- -GCGCUgGgUGuCGCGCUGCCGgC-GGG- -5'
21606	5'	-63.5	NC_004812.1	+	2841	0.69	0.423547
	Target:  5'- -aCGACCCccgcacGCGGCGCGACGccgaggacGCCGUgCg -3' miRNA:   3'- gcGCUGGG------UGUCGCGCUGC--------CGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	2882	0.73	0.266601
	Target:  5'- gGCGGCCgGCGGCgGCGGCGaGCagGCCg -3' miRNA:   3'- gCGCUGGgUGUCG-CGCUGC-CGg-CGGg -5'
21606	5'	-63.5	NC_004812.1	+	2969	0.66	0.61458
	Target:  5'- gCGCG-CCC--AGCGCcgagacgucgGGCGGCCgGUCCa -3' miRNA:   3'- -GCGCuGGGugUCGCG----------CUGCCGG-CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	3027	0.73	0.266601
	Target:  5'- uCG-GGCCCGCAGa--GGCGGuuGCCCa -3' miRNA:   3'- -GCgCUGGGUGUCgcgCUGCCggCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	3179	0.73	0.270785
	Target:  5'- gGCGACCUggcgcauccaggcgGCGGCGCGGCGcaGCgGgCCCg -3' miRNA:   3'- gCGCUGGG--------------UGUCGCGCUGC--CGgC-GGG- -5'
21606	5'	-63.5	NC_004812.1	+	3244	0.68	0.474988
	Target:  5'- gGCG-CCCGCcaggGGCGCccGCGcccccGCCGCCCg -3' miRNA:   3'- gCGCuGGGUG----UCGCGc-UGC-----CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	3264	0.72	0.297653
	Target:  5'- gGCGGgCCGCAGCGCG-CGGCgagcgagGCCa -3' miRNA:   3'- gCGCUgGGUGUCGCGCuGCCGg------CGGg -5'
21606	5'	-63.5	NC_004812.1	+	3381	0.7	0.399107
	Target:  5'- cCGCG-CCCAUcGUgauagGCGACucGCCGCCCg -3' miRNA:   3'- -GCGCuGGGUGuCG-----CGCUGc-CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	3421	0.68	0.520128
	Target:  5'- gGCugGGCCCcgGCGGCacGCGGCGccaGCCGCCg -3' miRNA:   3'- gCG--CUGGG--UGUCG--CGCUGC---CGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	3423	0.7	0.399107
	Target:  5'- gGCGGCCCucCGGCGcCGcCGcGCCcCCCg -3' miRNA:   3'- gCGCUGGGu-GUCGC-GCuGC-CGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	3479	0.75	0.180351
	Target:  5'- uCGCG-CCguCAGCGCGGCGGgCCGCg- -3' miRNA:   3'- -GCGCuGGguGUCGCGCUGCC-GGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	3495	0.69	0.4153
	Target:  5'- cCGCG-CCCGCcccCGgGGCGGC-GCCCa -3' miRNA:   3'- -GCGCuGGGUGuc-GCgCUGCCGgCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	3506	0.71	0.345721
	Target:  5'- gCGCgGGCCCGgGGC-CGGCGGCC-CCg -3' miRNA:   3'- -GCG-CUGGGUgUCGcGCUGCCGGcGGg -5'
21606	5'	-63.5	NC_004812.1	+	3581	0.67	0.566855
	Target:  5'- gGCGGCggCgGCGGCG-GGCGGgCGCgCCg -3' miRNA:   3'- gCGCUG--GgUGUCGCgCUGCCgGCG-GG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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