miRNA display CGI


Results 61 - 80 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 3624 0.66 0.585863
Target:  5'- --aGGCCCGCcccGGCGCucaGGCCcaGCCCa -3'
miRNA:   3'- gcgCUGGGUG---UCGCGcugCCGG--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 3629 0.75 0.189047
Target:  5'- gCGCG-CCgGCGggcGCGCGGC-GCCGCCCg -3'
miRNA:   3'- -GCGCuGGgUGU---CGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 3747 0.76 0.167971
Target:  5'- cCGCGcGCCagcaGCGGCGCGGCGG-CGCCg -3'
miRNA:   3'- -GCGC-UGGg---UGUCGCGCUGCCgGCGGg -5'
21606 5' -63.5 NC_004812.1 + 3791 0.76 0.172011
Target:  5'- gGCG-CgCACGGCgGCGACGGCgGCCUc -3'
miRNA:   3'- gCGCuGgGUGUCG-CGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 3876 0.81 0.072862
Target:  5'- cCGCGGCCCGCAaGCGCccGGCcuccgccuccgaGGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGU-CGCG--CUG------------CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 3902 0.72 0.30419
Target:  5'- gCGCgGGCgCgGCGGCGCGGCGGCgggGCCg -3'
miRNA:   3'- -GCG-CUG-GgUGUCGCGCUGCCGg--CGGg -5'
21606 5' -63.5 NC_004812.1 + 3936 0.82 0.069285
Target:  5'- gGCGGCggCACGGCGCGcGCGGCCGCCa -3'
miRNA:   3'- gCGCUGg-GUGUCGCGC-UGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 3970 0.69 0.440329
Target:  5'- gGCGccccCCCGCcGCGCGcCGGCCGggcaCCu -3'
miRNA:   3'- gCGCu---GGGUGuCGCGCuGCCGGCg---GG- -5'
21606 5' -63.5 NC_004812.1 + 4019 0.72 0.313527
Target:  5'- gCGCGGCaggccgugaggcacuCgGCGGCgGCGGCGGCCGCg- -3'
miRNA:   3'- -GCGCUG---------------GgUGUCG-CGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 4092 0.72 0.291225
Target:  5'- cCGCGGCCC-CGGCGg---GGCCGUCCu -3'
miRNA:   3'- -GCGCUGGGuGUCGCgcugCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 4147 0.7 0.367961
Target:  5'- gGCGGCCgCcagGCGGCGCugcGCGGCgaugaCGCCCg -3'
miRNA:   3'- gCGCUGG-G---UGUCGCGc--UGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 4201 0.68 0.520128
Target:  5'- gGCGccCCCGCGGCGCc-CGGCC-CCa -3'
miRNA:   3'- gCGCu-GGGUGUCGCGcuGCCGGcGGg -5'
21606 5' -63.5 NC_004812.1 + 4237 0.73 0.243688
Target:  5'- gGCGG-CgGCGGCgGCGGCGGCggCGCCCg -3'
miRNA:   3'- gCGCUgGgUGUCG-CGCUGCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 4353 0.75 0.184654
Target:  5'- gGCGGCUCAUGGCGaCGGCGGCgGCg- -3'
miRNA:   3'- gCGCUGGGUGUCGC-GCUGCCGgCGgg -5'
21606 5' -63.5 NC_004812.1 + 4383 0.68 0.466193
Target:  5'- gCGCcaGGCCCcagccgaaGCGGC-CGGCGGCCauggcguaGCCCa -3'
miRNA:   3'- -GCG--CUGGG--------UGUCGcGCUGCCGG--------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 4434 0.66 0.61458
Target:  5'- gGCGGCCCcggGCcGCGUGucc-CCGCCCg -3'
miRNA:   3'- gCGCUGGG---UGuCGCGCugccGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 4507 0.68 0.465318
Target:  5'- gGCGGCaugcuguucgaCCAgGGCGCGcugcuggGCGGCCGCa- -3'
miRNA:   3'- gCGCUG-----------GGUgUCGCGC-------UGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 4621 0.7 0.367961
Target:  5'- gGUGGCCCuuagggGCGGgGgGGCGGgaCGCCCg -3'
miRNA:   3'- gCGCUGGG------UGUCgCgCUGCCg-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 4631 0.73 0.260714
Target:  5'- gGCG-CCCACAcgggcgcggGCGCGcCGGCgGCCUc -3'
miRNA:   3'- gCGCuGGGUGU---------CGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 4695 0.73 0.243688
Target:  5'- gCGCGcCCCAgAGCcccggGCGGCuGUCGCCCa -3'
miRNA:   3'- -GCGCuGGGUgUCG-----CGCUGcCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.