miRNA display CGI

Results 81 - 100 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	4706	0.69	0.448003
	Target:  5'- -cCGGCCCGCcGCGCGAggaCGGggcgugugcccgcUCGCCCg -3' miRNA:   3'- gcGCUGGGUGuCGCGCU---GCC-------------GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	4742	0.7	0.383324
	Target:  5'- aCGCGcCCCGgGG-GCGGCGGCucggCGCCg -3' miRNA:   3'- -GCGCuGGGUgUCgCGCUGCCG----GCGGg -5'
21606	5'	-63.5	NC_004812.1	+	4850	0.75	0.184654
	Target:  5'- -aCGGCCCGCGGCgGCG-CGGCCgugaagcgGCCCg -3' miRNA:   3'- gcGCUGGGUGUCG-CGCuGCCGG--------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	4889	0.74	0.232328
	Target:  5'- uCGCG-CCCggccacgGCGGCGCGcGCGcGCCGCCg -3' miRNA:   3'- -GCGCuGGG-------UGUCGCGC-UGC-CGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	4929	0.74	0.232858
	Target:  5'- uGCGGCCCgcggagGCGGCGCuggagGGCGGCCGgCg -3' miRNA:   3'- gCGCUGGG------UGUCGCG-----CUGCCGGCgGg -5'
21606	5'	-63.5	NC_004812.1	+	4966	0.66	0.595413
	Target:  5'- gGCGGCCgGCGGCggcgaggcggggGCGACGG--GUCCg -3' miRNA:   3'- gCGCUGGgUGUCG------------CGCUGCCggCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5030	0.68	0.501854
	Target:  5'- cCGaCGACCCcgggccggggGC-GCGCGAgGGCgccgCGCCCc -3' miRNA:   3'- -GC-GCUGGG----------UGuCGCGCUgCCG----GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5032	0.66	0.604988
	Target:  5'- gGCGGCaggcgggGCAGCGCcGCGGUCacggggGCCCg -3' miRNA:   3'- gCGCUGgg-----UGUCGCGcUGCCGG------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5135	0.66	0.585863
	Target:  5'- gGCcGCCCggggACGGCgGCGuCGGCCcgcgguccggGCCCg -3' miRNA:   3'- gCGcUGGG----UGUCG-CGCuGCCGG----------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5242	0.76	0.167971
	Target:  5'- uCGCGGCCguCGgGGCGCGccgaguCGGCCGCCg -3' miRNA:   3'- -GCGCUGG--GUgUCGCGCu-----GCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	5273	0.7	0.407153
	Target:  5'- nCGCGGCCC-C-GCGCu-CGGCCGaCUCg -3' miRNA:   3'- -GCGCUGGGuGuCGCGcuGCCGGC-GGG- -5'
21606	5'	-63.5	NC_004812.1	+	5307	0.72	0.278696
	Target:  5'- gGCGAgcUCCGCgAGCGCGuCGuccgccggggcGCCGCCCg -3' miRNA:   3'- gCGCU--GGGUG-UCGCGCuGC-----------CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5411	0.68	0.483866
	Target:  5'- uCGcCGGcCCCGCGGa-CGACGGCggggacagCGCCCg -3' miRNA:   3'- -GC-GCU-GGGUGUCgcGCUGCCG--------GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5458	0.66	0.633794
	Target:  5'- uCGCGcccGCCCACcagggccacgggGGgGCGAgGGUCaCCCa -3' miRNA:   3'- -GCGC---UGGGUG------------UCgCGCUgCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5487	0.74	0.238222
	Target:  5'- gCGCGGggaCACGGCgGCGGCGGCgGCCg -3' miRNA:   3'- -GCGCUgg-GUGUCG-CGCUGCCGgCGGg -5'
21606	5'	-63.5	NC_004812.1	+	5587	0.7	0.407153
	Target:  5'- gGCGGCCCGuCGGCGgGGuccugcgaGGCCGCg- -3' miRNA:   3'- gCGCUGGGU-GUCGCgCUg-------CCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	5688	0.67	0.529364
	Target:  5'- gCGCGAa-CGCcGCGCGGCGGUC-UCCg -3' miRNA:   3'- -GCGCUggGUGuCGCGCUGCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5752	0.69	0.435254
	Target:  5'- cCGCccaGGCCCacagggacagcgucaGCAGCGCGGgguCGGC-GCCCg -3' miRNA:   3'- -GCG---CUGGG---------------UGUCGCGCU---GCCGgCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5816	0.66	0.624184
	Target:  5'- uGCGGggCGCGGCGggcucugcgggcCGGCGGCgCGCUCg -3' miRNA:   3'- gCGCUggGUGUCGC------------GCUGCCG-GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	5875	0.66	0.583003
	Target:  5'- gCGCGGgCCGgGGgGCGcgggcgcgggcucaGgGGCCGCCg -3' miRNA:   3'- -GCGCUgGGUgUCgCGC--------------UgCCGGCGGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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