miRNA display CGI


Results 101 - 120 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 5925 0.73 0.249258
Target:  5'- cCGCGACgCCGCcccggAGCGCGGgGGCgaccggcggcucCGCCCc -3'
miRNA:   3'- -GCGCUG-GGUG-----UCGCGCUgCCG------------GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 6006 0.72 0.310838
Target:  5'- gCGCG-UCgGC-GCGCGGCGgcGCCGCCCc -3'
miRNA:   3'- -GCGCuGGgUGuCGCGCUGC--CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 6189 0.74 0.20755
Target:  5'- uCGCGgagGCCCGgGGCGCc-CGGCgGCCCg -3'
miRNA:   3'- -GCGC---UGGGUgUCGCGcuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 6326 0.68 0.501854
Target:  5'- gGgGGCCCcgggcaggagggGCAGCagggggcgGCaGGCGcGCCGCCCg -3'
miRNA:   3'- gCgCUGGG------------UGUCG--------CG-CUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 6406 0.69 0.423547
Target:  5'- gGCGACgCCgggguACGGCGCGcCGuacagcCCGCCCg -3'
miRNA:   3'- gCGCUG-GG-----UGUCGCGCuGCc-----GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 6842 0.75 0.202783
Target:  5'- gGCGGCCCucgcgguCGGCGaGGCGGCcCGCCg -3'
miRNA:   3'- gCGCUGGGu------GUCGCgCUGCCG-GCGGg -5'
21606 5' -63.5 NC_004812.1 + 7049 0.66 0.61458
Target:  5'- cCGCGACUguggACcGCGCcAgGGCCGCuCCa -3'
miRNA:   3'- -GCGCUGGg---UGuCGCGcUgCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 7249 0.67 0.576341
Target:  5'- aCGUGACCgGCGGCGUcccCcGUCGCCUa -3'
miRNA:   3'- -GCGCUGGgUGUCGCGcu-GcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 7281 0.7 0.375589
Target:  5'- gGCGGCggCCGC-GUGUGA-GGCCGCCUg -3'
miRNA:   3'- gCGCUG--GGUGuCGCGCUgCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 7413 0.67 0.551763
Target:  5'- aCGUGACCCGgugauccgucguugcUAG-GCGACcggggacGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGU---------------GUCgCGCUGc------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 7467 0.71 0.353026
Target:  5'- cCGCGGggaCCGC-GCGCcccGGCGGCCGCgCg -3'
miRNA:   3'- -GCGCUg--GGUGuCGCG---CUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 7508 0.73 0.272595
Target:  5'- gGCGcccaaccCCCGCccCGCGGCGcGCCGCCCc -3'
miRNA:   3'- gCGCu------GGGUGucGCGCUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 7670 0.67 0.545198
Target:  5'- cCGCGGgCCgggagcggggguggGCgGGCGCGGgGGUCGCgCCg -3'
miRNA:   3'- -GCGCUgGG--------------UG-UCGCGCUgCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 7777 0.69 0.44886
Target:  5'- gCGCG-CCgUGCGGCGCGGCcguguaGGCCGCg- -3'
miRNA:   3'- -GCGCuGG-GUGUCGCGCUG------CCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 7840 0.66 0.633794
Target:  5'- gGCGGCUCucuCGGgGCGGgGGUCGgUCg -3'
miRNA:   3'- gCGCUGGGu--GUCgCGCUgCCGGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 7873 0.69 0.412846
Target:  5'- gGCGcCCCGC-GCGUcgcgucgcgaucucGAgGGUCGCCCg -3'
miRNA:   3'- gCGCuGGGUGuCGCG--------------CUgCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 7927 0.7 0.375589
Target:  5'- uGCGGCgCGCgccGGCGCGGCcggggGGCgCGUCCg -3'
miRNA:   3'- gCGCUGgGUG---UCGCGCUG-----CCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 8014 0.73 0.243688
Target:  5'- cCGCGACCCcggGgGGCGCGGgcCGGCCuccGCCg -3'
miRNA:   3'- -GCGCUGGG---UgUCGCGCU--GCCGG---CGGg -5'
21606 5' -63.5 NC_004812.1 + 8072 0.76 0.156358
Target:  5'- cCGCGAcCCCGCcGCGCc-CGGCgGCCCg -3'
miRNA:   3'- -GCGCU-GGGUGuCGCGcuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 8209 0.69 0.440329
Target:  5'- aGCGGCCgGgGGCccGCGuCGGaCgCGCCCg -3'
miRNA:   3'- gCGCUGGgUgUCG--CGCuGCC-G-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.