miRNA display CGI


Results 121 - 140 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 8311 0.66 0.633794
Target:  5'- aGCGAgCgcaGCAGCGggcCGGCGccGCCGCCg -3'
miRNA:   3'- gCGCUgGg--UGUCGC---GCUGC--CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 8353 0.81 0.076616
Target:  5'- gCGCGGccgcCCCACcGCGuCGGCGGCCGCCg -3'
miRNA:   3'- -GCGCU----GGGUGuCGC-GCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 8382 0.67 0.566855
Target:  5'- nCGgGGCCCgggguccgGgGGCGCGGCGGgggcuCgGCCCc -3'
miRNA:   3'- -GCgCUGGG--------UgUCGCGCUGCC-----GgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 8403 0.72 0.284907
Target:  5'- aGCGGCCCccccGCAGCccuCGACccgugaGGCCGCUCa -3'
miRNA:   3'- gCGCUGGG----UGUCGc--GCUG------CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 8490 0.74 0.217376
Target:  5'- --aGAUCgaGCGGC-CGGCGGCCGCCCg -3'
miRNA:   3'- gcgCUGGg-UGUCGcGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9076 0.67 0.566855
Target:  5'- cCGCcGCCCguccaggcgGCGGCGCGAagaCGG-CGCCUc -3'
miRNA:   3'- -GCGcUGGG---------UGUCGCGCU---GCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9083 0.67 0.548009
Target:  5'- uGCGGCuCCGuCGGuCGUuucGcCGGCCGCCUc -3'
miRNA:   3'- gCGCUG-GGU-GUC-GCG---CuGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9122 0.79 0.111258
Target:  5'- cCG-GACCCccGCGGCGCcACGGUCGCCCu -3'
miRNA:   3'- -GCgCUGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9464 0.68 0.520128
Target:  5'- uGCGAgUCGCAGCGaCGcuGCGaGCagcaCGCCCg -3'
miRNA:   3'- gCGCUgGGUGUCGC-GC--UGC-CG----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9467 0.66 0.595413
Target:  5'- -cUGGCCCACGcCGCGACGuGCuCGUgCg -3'
miRNA:   3'- gcGCUGGGUGUcGCGCUGC-CG-GCGgG- -5'
21606 5' -63.5 NC_004812.1 + 9685 0.7 0.367961
Target:  5'- cCGCGAggaaaCCCAgAGgaaaCGCGAccCGGaCCGCCCg -3'
miRNA:   3'- -GCGCU-----GGGUgUC----GCGCU--GCC-GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9755 0.82 0.065877
Target:  5'- cCGCcaccaGGCCCGCGGCGCGccgGCGGCCGCgCg -3'
miRNA:   3'- -GCG-----CUGGGUGUCGCGC---UGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 9791 0.66 0.622263
Target:  5'- gGUGuCCCGCGGgaGUGACcuucgauucccaGCCGCCCu -3'
miRNA:   3'- gCGCuGGGUGUCg-CGCUGc-----------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 10110 0.67 0.566855
Target:  5'- gGCcaGGCCCACggccuggcguucAGCGUGAggccCGGUaCGCCCa -3'
miRNA:   3'- gCG--CUGGGUG------------UCGCGCU----GCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 10207 0.66 0.633794
Target:  5'- aCGCGgaGCUgGCcGCGC-ACGGCUGUCUg -3'
miRNA:   3'- -GCGC--UGGgUGuCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 10267 0.67 0.538659
Target:  5'- cCGCGAC--GCAGC-CGACGGCgCGCg- -3'
miRNA:   3'- -GCGCUGggUGUCGcGCUGCCG-GCGgg -5'
21606 5' -63.5 NC_004812.1 + 10298 0.66 0.61458
Target:  5'- gCGcCGACgCCugAGCGCcgucuGCuGCCGUCCc -3'
miRNA:   3'- -GC-GCUG-GGugUCGCGc----UGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 10627 0.72 0.297653
Target:  5'- aCGCGACCCcgcACAGC---ACGGCCcccaGCCCg -3'
miRNA:   3'- -GCGCUGGG---UGUCGcgcUGCCGG----CGGG- -5'
21606 5' -63.5 NC_004812.1 + 10636 0.69 0.422717
Target:  5'- uGCGGCCgugCAauaaaaGGgGCGgcuuuucGCGGCCGCCCc -3'
miRNA:   3'- gCGCUGG---GUg-----UCgCGC-------UGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 10742 0.66 0.624184
Target:  5'- gGCGGCa-ACGGCgGCGACGcGCCuGCgCg -3'
miRNA:   3'- gCGCUGggUGUCG-CGCUGC-CGG-CGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.