miRNA display CGI


Results 21 - 40 of 1515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 155181 0.73 0.272595
Target:  5'- uCGCGGCCC-CGGCcccucccCG-CGGCCGCCg -3'
miRNA:   3'- -GCGCUGGGuGUCGc------GCuGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 155115 0.71 0.345721
Target:  5'- gCGCGGgCCGgcCGGCGCuccGCcGCCGCCCg -3'
miRNA:   3'- -GCGCUgGGU--GUCGCGc--UGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154985 0.71 0.352291
Target:  5'- gCGgGACCCGC-GCGC-ACGGUcccucgcgcggggCGCCCg -3'
miRNA:   3'- -GCgCUGGGUGuCGCGcUGCCG-------------GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154942 0.71 0.317594
Target:  5'- gGCGGgCCGCGGCGCcGCGGCCa--- -3'
miRNA:   3'- gCGCUgGGUGUCGCGcUGCCGGcggg -5'
21606 5' -63.5 NC_004812.1 + 154832 0.71 0.338525
Target:  5'- aCGCGcuCCCGuCGGCGCGgggcGCGGCUGCg- -3'
miRNA:   3'- -GCGCu-GGGU-GUCGCGC----UGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 154803 0.68 0.518289
Target:  5'- gGCGGCCCcgacguccgccauGCuGCgGCGgggcggaGCGGCCgGCCCc -3'
miRNA:   3'- gCGCUGGG-------------UGuCG-CGC-------UGCCGG-CGGG- -5'
21606 5' -63.5 NC_004812.1 + 154720 0.68 0.483866
Target:  5'- gGgGugCCGCGG-GCGGggccCGGgCGCCCg -3'
miRNA:   3'- gCgCugGGUGUCgCGCU----GCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154616 0.71 0.353026
Target:  5'- aGCGACCgC-CGGCGgGAC--CCGCCCa -3'
miRNA:   3'- gCGCUGG-GuGUCGCgCUGccGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154519 0.68 0.492822
Target:  5'- gGCGGaggUCCGCuggaggcaGGaCGCGGCGGCgGUCCg -3'
miRNA:   3'- gCGCU---GGGUG--------UC-GCGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154505 0.77 0.149025
Target:  5'- uGgGACUgGgAGCGCGGCccgGGCCGCCCc -3'
miRNA:   3'- gCgCUGGgUgUCGCGCUG---CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154455 0.7 0.383324
Target:  5'- gGCGuCCCGgGGCGagcgaGGCGGCgCGgCCg -3'
miRNA:   3'- gCGCuGGGUgUCGCg----CUGCCG-GCgGG- -5'
21606 5' -63.5 NC_004812.1 + 154401 0.7 0.406344
Target:  5'- cCGCGGgCCGCGGCGacacgcugcucgcCGACGacgacgacGCCGCCg -3'
miRNA:   3'- -GCGCUgGGUGUCGC-------------GCUGC--------CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 154246 0.76 0.17572
Target:  5'- cCGCGACgCCGCGcGCGCcgggcccGACGcccuGCCGCCCg -3'
miRNA:   3'- -GCGCUG-GGUGU-CGCG-------CUGC----CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 154186 0.69 0.457483
Target:  5'- cCGCG-CCUGCGcGCGCugggGGCuGGCCGCgCCg -3'
miRNA:   3'- -GCGCuGGGUGU-CGCG----CUG-CCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 154113 0.67 0.529364
Target:  5'- nCGcCGACUCGCccgccCGCGA-GGCCGCCg -3'
miRNA:   3'- -GC-GCUGGGUGuc---GCGCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 154089 0.76 0.176137
Target:  5'- uGCuGCCCGC-GCuCGACGGCCGCgCCg -3'
miRNA:   3'- gCGcUGGGUGuCGcGCUGCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 154000 0.66 0.621302
Target:  5'- cCGCGGCgccaacgugcgcuaCCGC-GCGCGcACGcGCCucggGCCCg -3'
miRNA:   3'- -GCGCUG--------------GGUGuCGCGC-UGC-CGG----CGGG- -5'
21606 5' -63.5 NC_004812.1 + 153932 0.67 0.557409
Target:  5'- gGCGuCuUCGC-GCGCGucgaGGCCGCCUg -3'
miRNA:   3'- gCGCuG-GGUGuCGCGCug--CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153868 0.74 0.217376
Target:  5'- cCGCuGGCCCGCcgcGCGCGACcugcGCCGCgCCg -3'
miRNA:   3'- -GCG-CUGGGUGu--CGCGCUGc---CGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 153544 0.66 0.595413
Target:  5'- cCGCcGCCCAcCGGCGaGGCuGUCGUCCu -3'
miRNA:   3'- -GCGcUGGGU-GUCGCgCUGcCGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.