miRNA display CGI


Results 41 - 60 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 153535 0.71 0.317594
Target:  5'- cCGCcugGACCgACGcGCGCGGCGGCCuCUCc -3'
miRNA:   3'- -GCG---CUGGgUGU-CGCGCUGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 153469 0.7 0.391164
Target:  5'- gGCGGaggGgAGCGCGGCGGCCGCg- -3'
miRNA:   3'- gCGCUgggUgUCGCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 153404 0.72 0.291225
Target:  5'- gCGCGccucggGCCCGCuGCGCcGCGccGCCGCCUg -3'
miRNA:   3'- -GCGC------UGGGUGuCGCGcUGC--CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153345 0.67 0.576341
Target:  5'- gGCGucuCCUcggGCGGCGgGggcGCGGgCGCCCc -3'
miRNA:   3'- gCGCu--GGG---UGUCGCgC---UGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153334 0.74 0.227597
Target:  5'- gCGCGcuggccucGCUCGCcGCGCGcuGCGGcCCGCCCg -3'
miRNA:   3'- -GCGC--------UGGGUGuCGCGC--UGCC-GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153269 0.76 0.167971
Target:  5'- cCGgGGCgCGgGGCGCGGCGGCCccucggGCCCc -3'
miRNA:   3'- -GCgCUGgGUgUCGCGCUGCCGG------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 153201 0.68 0.466193
Target:  5'- cCGgGGCCCAgccacacgcCGGCGCccuccGCcGCCGCCCu -3'
miRNA:   3'- -GCgCUGGGU---------GUCGCGc----UGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153184 0.7 0.375589
Target:  5'- gGgGGCgCgGCGGCGCcgGAgGGCCGCCg -3'
miRNA:   3'- gCgCUG-GgUGUCGCG--CUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 153129 0.85 0.041689
Target:  5'- cCGCGGCCCGCcGCGCuGACGGCgcgacCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCG-CUGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153075 0.7 0.383324
Target:  5'- aGcCGGCCC--GGCGCcGCGGCCccGCCCc -3'
miRNA:   3'- gC-GCUGGGugUCGCGcUGCCGG--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 152986 0.69 0.446291
Target:  5'- cCGCGcGCCCGcCGGCGCGcaagcGCaagagcuccucgccGGCgCGCCCg -3'
miRNA:   3'- -GCGC-UGGGU-GUCGCGC-----UG--------------CCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 152882 0.72 0.297653
Target:  5'- gCGCGGCCCGCgccaGGUGCGcuccgccgGCGccGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUG----UCGCGC--------UGC--CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152798 0.75 0.198111
Target:  5'- cCGCGucGCCgGCGGCGcCGA-GGCCGCCg -3'
miRNA:   3'- -GCGC--UGGgUGUCGC-GCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152741 0.68 0.492822
Target:  5'- gCGCGagcuGCgCCGCAcGCGCGACGcGCUgguGCUCa -3'
miRNA:   3'- -GCGC----UG-GGUGU-CGCGCUGC-CGG---CGGG- -5'
21606 5' -63.5 NC_004812.1 + 152741 0.7 0.391164
Target:  5'- gGCG-CUUGCGGgcCGCGGCGGCCGCg- -3'
miRNA:   3'- gCGCuGGGUGUC--GCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 152684 0.71 0.324461
Target:  5'- gCGcCGugCCGCGccGCGCGGCcccGCCGCCg -3'
miRNA:   3'- -GC-GCugGGUGU--CGCGCUGc--CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152626 0.7 0.399107
Target:  5'- gCGCuGGCCgagggcUACGGCgGCGACcuGGCCGCCg -3'
miRNA:   3'- -GCG-CUGG------GUGUCG-CGCUG--CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152564 0.68 0.492822
Target:  5'- aCGaCGACgCCGCGGcCGCcGCcGCCGCCg -3'
miRNA:   3'- -GC-GCUG-GGUGUC-GCGcUGcCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152560 0.7 0.391164
Target:  5'- aGCGGCCUGCGGCggaggcggaGCGGCGGgCgGCgCg -3'
miRNA:   3'- gCGCUGGGUGUCG---------CGCUGCC-GgCGgG- -5'
21606 5' -63.5 NC_004812.1 + 152447 0.82 0.065877
Target:  5'- cCGCGggcgucaucGCCgCGCAGCGCcgccuGGCGGCCGCCCu -3'
miRNA:   3'- -GCGC---------UGG-GUGUCGCG-----CUGCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.