miRNA display CGI


Results 61 - 80 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 152349 0.67 0.538659
Target:  5'- gCGCGAgaacgcCgCCGCGGCG-GGCGccGCCGCCg -3'
miRNA:   3'- -GCGCU------G-GGUGUCGCgCUGC--CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152183 0.68 0.523815
Target:  5'- aCGCGGCCCgggGCcgccucgggcaggcgAGUGCGGCGGgaCCaCCCg -3'
miRNA:   3'- -GCGCUGGG---UG---------------UCGCGCUGCC--GGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 152183 0.69 0.452299
Target:  5'- cCGUGGCCCGCgccgugccgcaccugGGCuacGCcAUGGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUG---------------UCG---CGcUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 152085 0.72 0.303532
Target:  5'- uGCGGCCgcccaGCAGCGCGcccuggucgaacaGCauGCCGCCCa -3'
miRNA:   3'- gCGCUGGg----UGUCGCGC-------------UGc-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 152011 0.71 0.36044
Target:  5'- gGCGAC--GCGGCGCGGCaGUaCGCCCu -3'
miRNA:   3'- gCGCUGggUGUCGCGCUGcCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151979 0.7 0.383324
Target:  5'- gCGCG-CCCGCGccCGUGugGGC-GCCCg -3'
miRNA:   3'- -GCGCuGGGUGUc-GCGCugCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151942 0.75 0.193533
Target:  5'- gGCG-CCgGC-GCGCGACGGCCggcgaGCCCc -3'
miRNA:   3'- gCGCuGGgUGuCGCGCUGCCGG-----CGGG- -5'
21606 5' -63.5 NC_004812.1 + 151887 0.76 0.176137
Target:  5'- gCGCGugCUcuacgGCGGCcuggGCGACaGCCGCCCg -3'
miRNA:   3'- -GCGCugGG-----UGUCG----CGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151855 0.7 0.399107
Target:  5'- cCGUGGCCC--GGCGCcgaGCcGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGugUCGCGc--UGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151810 0.66 0.585863
Target:  5'- gGCGccuucuacGCCCGCuacCGCGACGGguaCGCCa -3'
miRNA:   3'- gCGC--------UGGGUGuc-GCGCUGCCg--GCGGg -5'
21606 5' -63.5 NC_004812.1 + 151740 0.76 0.167971
Target:  5'- gCGCGACgCCACGGgcCGCuucACGGCCGCgCCg -3'
miRNA:   3'- -GCGCUG-GGUGUC--GCGc--UGCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 151705 0.77 0.138611
Target:  5'- aGCGAgCgGCGGCGCGcGCGcGCCGCCg -3'
miRNA:   3'- gCGCUgGgUGUCGCGC-UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 151655 0.71 0.353026
Target:  5'- cCGCcGCCgGCcGCcCGcCGGCCGCCCu -3'
miRNA:   3'- -GCGcUGGgUGuCGcGCuGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151616 0.71 0.331438
Target:  5'- cCGCccGCCCuGCGGCGC-ACGGCCcCCCg -3'
miRNA:   3'- -GCGc-UGGG-UGUCGCGcUGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 151572 0.7 0.407153
Target:  5'- cCGUGA-CCGCGGCGCuGCcccgccuGCCGCCCc -3'
miRNA:   3'- -GCGCUgGGUGUCGCGcUGc------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151554 0.71 0.317594
Target:  5'- cCGgGGCCgGgGGCGCGGCGcccucGCgCGCCCc -3'
miRNA:   3'- -GCgCUGGgUgUCGCGCUGC-----CG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151360 0.74 0.238222
Target:  5'- gGCGGCCgACucGGCGCgccccGACGGCCGCg- -3'
miRNA:   3'- gCGCUGGgUG--UCGCG-----CUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 151277 0.67 0.548009
Target:  5'- cCGcCGACCCcggGCGGCGCcccGGCGGacgacgCGCUCg -3'
miRNA:   3'- -GC-GCUGGG---UGUCGCG---CUGCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151240 0.67 0.557409
Target:  5'- cCGCGACUCGguGUGggucauCGAC-GCCGCCg -3'
miRNA:   3'- -GCGCUGGGUguCGC------GCUGcCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 151014 0.75 0.189047
Target:  5'- aCGCGGCCuCGCAGgacccCGcCGACgGGCCGCCg -3'
miRNA:   3'- -GCGCUGG-GUGUC-----GC-GCUG-CCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.