miRNA display CGI


Results 81 - 100 of 1515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 150977 0.67 0.576341
Target:  5'- gGCGACCC-CGG-GCc-CGGCC-CCCg -3'
miRNA:   3'- gCGCUGGGuGUCgCGcuGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 150807 0.69 0.414481
Target:  5'- cCGCGcCCCGCAGCcccGCagcccgaGGCGGgCGCCg -3'
miRNA:   3'- -GCGCuGGGUGUCG---CG-------CUGCCgGCGGg -5'
21606 5' -63.5 NC_004812.1 + 150746 0.67 0.566855
Target:  5'- gGCGACCgCGCGaucGUGUaGACGGCaGCCg -3'
miRNA:   3'- gCGCUGG-GUGU---CGCG-CUGCCGgCGGg -5'
21606 5' -63.5 NC_004812.1 + 150687 0.72 0.310838
Target:  5'- cCGCGcUCCggGCGGCgucGCGGCGGCucCGCCCg -3'
miRNA:   3'- -GCGCuGGG--UGUCG---CGCUGCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 150617 0.67 0.548009
Target:  5'- gCGcCGACgCGCguuccGGgGCGugGGCCGCa- -3'
miRNA:   3'- -GC-GCUGgGUG-----UCgCGCugCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 150574 0.71 0.353026
Target:  5'- uCGCcGCCCuACGGCGCGcagucGCUGCCCg -3'
miRNA:   3'- -GCGcUGGG-UGUCGCGCugc--CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 150554 0.66 0.611701
Target:  5'- cCGCG-CCUGCGcggugucgauagccGCGCGGCGGCgGgCUCc -3'
miRNA:   3'- -GCGCuGGGUGU--------------CGCGCUGCCGgC-GGG- -5'
21606 5' -63.5 NC_004812.1 + 150384 0.67 0.564962
Target:  5'- cCGCgGGgCCGCGGCggcagggGCGGCguccgcgGGCCGCCg -3'
miRNA:   3'- -GCG-CUgGGUGUCG-------CGCUG-------CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 150248 0.76 0.167971
Target:  5'- cCGCGuCCCuggcggGCGGCGCGcCuGCCGCCCc -3'
miRNA:   3'- -GCGCuGGG------UGUCGCGCuGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 150193 0.66 0.633794
Target:  5'- gGCGGgCUguACGGCGCGccguacccCGGCguCGCCCu -3'
miRNA:   3'- gCGCUgGG--UGUCGCGCu-------GCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 150158 0.66 0.61458
Target:  5'- cCG-GGCCCGCGGuCGUcccGGCGGUCcCCCc -3'
miRNA:   3'- -GCgCUGGGUGUC-GCG---CUGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 150065 0.73 0.260714
Target:  5'- aGCGACUCGCGGCaGCccccuCGGCCcCCCg -3'
miRNA:   3'- gCGCUGGGUGUCG-CGcu---GCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 149810 0.68 0.466193
Target:  5'- --aGACgCC-CGGCGCGccccccgaggcACGGCuCGCCCg -3'
miRNA:   3'- gcgCUG-GGuGUCGCGC-----------UGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 149761 0.7 0.375589
Target:  5'- gGCGGgCCGCcucgccgacCGCGAgGGCCGCCg -3'
miRNA:   3'- gCGCUgGGUGuc-------GCGCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 149695 0.66 0.585863
Target:  5'- -cCGGCCCGCGG-GCG-CaGCgCGCCCc -3'
miRNA:   3'- gcGCUGGGUGUCgCGCuGcCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 149567 0.71 0.353026
Target:  5'- gCGCGGUCCACAGuCGCGGCGcGCaGCUa -3'
miRNA:   3'- -GCGCUGGGUGUC-GCGCUGC-CGgCGGg -5'
21606 5' -63.5 NC_004812.1 + 149544 0.65 0.642442
Target:  5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3'
miRNA:   3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 149329 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 149137 0.71 0.331438
Target:  5'- gCGCGGCcgCCGgGGCGCG-CGGUC-CCCg -3'
miRNA:   3'- -GCGCUG--GGUgUCGCGCuGCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 149095 0.7 0.383324
Target:  5'- gGCGGCgcgCCGCGGgGCGGgGGUugggCGCCCc -3'
miRNA:   3'- gCGCUG---GGUGUCgCGCUgCCG----GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.