miRNA display CGI


Results 101 - 120 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 149010 0.71 0.353026
Target:  5'- gGCGGgCCG-GGCGCGGCGG-CGCCg -3'
miRNA:   3'- gCGCUgGGUgUCGCGCUGCCgGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148997 0.67 0.566855
Target:  5'- gCGCGuCUC-CGGCGCGACcuCCGaCCCc -3'
miRNA:   3'- -GCGCuGGGuGUCGCGCUGccGGC-GGG- -5'
21606 5' -63.5 NC_004812.1 + 148959 0.75 0.202783
Target:  5'- cCGCgGGCCCGCAGCuucGCGccccgacccCGGCCGCCg -3'
miRNA:   3'- -GCG-CUGGGUGUCG---CGCu--------GCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148897 0.68 0.520128
Target:  5'- gCGCGGagaccCCCGCcgcggacucGGCGCGACccccgcGcCCGCCCa -3'
miRNA:   3'- -GCGCU-----GGGUG---------UCGCGCUGc-----C-GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 148891 0.68 0.482974
Target:  5'- gCGCgGAUCC-CGGCgggcgagcguccgGCGACGGgCGUCCg -3'
miRNA:   3'- -GCG-CUGGGuGUCG-------------CGCUGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 148825 0.69 0.457483
Target:  5'- cCGCGGCCUACAcggccGCGcCGcACGGCgCGCa- -3'
miRNA:   3'- -GCGCUGGGUGU-----CGC-GC-UGCCG-GCGgg -5'
21606 5' -63.5 NC_004812.1 + 148724 0.69 0.456616
Target:  5'- gGCGACCCucgagaucgcgacGCGacGCGCGGgGcGCCGCUa -3'
miRNA:   3'- gCGCUGGG-------------UGU--CGCGCUgC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148676 0.77 0.152652
Target:  5'- aCGCGcCCCcCGGcCGCGcCGGCgCGCCCg -3'
miRNA:   3'- -GCGCuGGGuGUC-GCGCuGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 148532 0.74 0.222436
Target:  5'- gCGCGGgCCGCcgGGCGCGGCggggucgcgGGCCGgCCg -3'
miRNA:   3'- -GCGCUgGGUG--UCGCGCUG---------CCGGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 148407 0.66 0.585863
Target:  5'- aCGCgGGCCCcCGGcCGCucuCGGCCGgacCCCg -3'
miRNA:   3'- -GCG-CUGGGuGUC-GCGcu-GCCGGC---GGG- -5'
21606 5' -63.5 NC_004812.1 + 148350 0.67 0.565909
Target:  5'- gGcCGGCCCcCGGCGCccccgggGGCGGaCCcccgGCCCg -3'
miRNA:   3'- gC-GCUGGGuGUCGCG-------CUGCC-GG----CGGG- -5'
21606 5' -63.5 NC_004812.1 + 148276 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 148235 0.69 0.44886
Target:  5'- cCG-GACCCcgGGCccCGGCGGCCGCCg -3'
miRNA:   3'- -GCgCUGGGugUCGc-GCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148195 0.7 0.391164
Target:  5'- aGCGGCCuCACGggucgagggcuGCGgGGgGGCCGCUUg -3'
miRNA:   3'- gCGCUGG-GUGU-----------CGCgCUgCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 148160 0.68 0.474105
Target:  5'- cCG-GGCCCGCcgAGCGCuccggcgggcgggGGCGGCgGCCUc -3'
miRNA:   3'- -GCgCUGGGUG--UCGCG-------------CUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 148093 0.69 0.440329
Target:  5'- gGCGACCgggauaaaagGCAGCcgGCucgGGCGGCCGCCg -3'
miRNA:   3'- gCGCUGGg---------UGUCG--CG---CUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148015 0.67 0.566855
Target:  5'- gCGCGGCCUcCGG-GCGGCGcGCCaCCg -3'
miRNA:   3'- -GCGCUGGGuGUCgCGCUGC-CGGcGGg -5'
21606 5' -63.5 NC_004812.1 + 147757 0.69 0.457483
Target:  5'- aCGCGGggcuCCCGCGGgaCGCGG-GGUCGCCg -3'
miRNA:   3'- -GCGCU----GGGUGUC--GCGCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 147511 0.66 0.585863
Target:  5'- gGUGGCCCcgaGGCGcCGucuuCGcGCCGCCg -3'
miRNA:   3'- gCGCUGGGug-UCGC-GCu---GC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 147225 0.71 0.36044
Target:  5'- gCGgGGCgC-CAGCGCGGCcacgaaguucauGGCCGCCg -3'
miRNA:   3'- -GCgCUGgGuGUCGCGCUG------------CCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.