miRNA display CGI


Results 41 - 60 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 1227 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 27761 0.83 0.05805
Target:  5'- cCGCGGCCCGCAgGgGCgGGCGGCCcaGCCCg -3'
miRNA:   3'- -GCGCUGGGUGU-CgCG-CUGCCGG--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 128137 0.83 0.055178
Target:  5'- cCGCGGCCCA-GGCGCGGCGGCgGCgCg -3'
miRNA:   3'- -GCGCUGGGUgUCGCGCUGCCGgCGgG- -5'
21606 5' -63.5 NC_004812.1 + 117375 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 153129 0.85 0.041689
Target:  5'- cCGCGGCCCGCcGCGCuGACGGCgcgacCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCG-CUGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 40202 0.81 0.074717
Target:  5'- gCGCgGGCCCGCAGCGgauCGGCGaCCGCCCg -3'
miRNA:   3'- -GCG-CUGGGUGUCGC---GCUGCcGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 50432 0.81 0.074717
Target:  5'- gCGCGAgauCCUGCGGCGCGA-GGCCGCCg -3'
miRNA:   3'- -GCGCU---GGGUGUCGCGCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 19627 0.79 0.100796
Target:  5'- gCGCGuccgguCUCGCGGCGaCGugGGCCGCCa -3'
miRNA:   3'- -GCGCu-----GGGUGUCGC-GCugCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 118428 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 93594 0.79 0.098329
Target:  5'- gCGCGcGCUCGCGGaCGCGGCGGCCcgcgcuuccGCCCg -3'
miRNA:   3'- -GCGC-UGGGUGUC-GCGCUGCCGG---------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 112981 0.8 0.09592
Target:  5'- gGCGAUggaUCGCGGCGCcGCGGCCGCCg -3'
miRNA:   3'- gCGCUG---GGUGUCGCGcUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 98410 0.8 0.09592
Target:  5'- gGCGGCgCCGCAGCgucucgguGCGGCGGCCGCg- -3'
miRNA:   3'- gCGCUG-GGUGUCG--------CGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 125676 0.8 0.095682
Target:  5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 60088 0.8 0.093566
Target:  5'- gGCGGCCCGCgccagguaGGCGcCGAUGGCCgugGCCCg -3'
miRNA:   3'- gCGCUGGGUG--------UCGC-GCUGCCGG---CGGG- -5'
21606 5' -63.5 NC_004812.1 + 138727 0.8 0.089022
Target:  5'- gGCgGGCCCGCGGCGUGccggcCGGUCGCCCc -3'
miRNA:   3'- gCG-CUGGGUGUCGCGCu----GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 127730 0.8 0.0877
Target:  5'- cCGCGGCCCGCggccagcgcacgcgcGGCGCGGCGGCgggGUCCg -3'
miRNA:   3'- -GCGCUGGGUG---------------UCGCGCUGCCGg--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 100701 0.81 0.080556
Target:  5'- gGCGugUCGCAGCGCGACcGUCGCCa -3'
miRNA:   3'- gCGCugGGUGUCGCGCUGcCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 67778 0.81 0.080354
Target:  5'- gGCGGCCCGgGGCGCgGGCGGCUucggggggggcggGCCCg -3'
miRNA:   3'- gCGCUGGGUgUCGCG-CUGCCGG-------------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 103262 0.81 0.076616
Target:  5'- gCGCaGGCgCGCgGGgGCGACGGCCGCCCc -3'
miRNA:   3'- -GCG-CUGgGUG-UCgCGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 8353 0.81 0.076616
Target:  5'- gCGCGGccgcCCCACcGCGuCGGCGGCCGCCg -3'
miRNA:   3'- -GCGCU----GGGUGuCGC-GCUGCCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.